Error building ANTs related to MD5

[ik362]

When did the error occur?

[ ] CMake configuration (cmake / ccmake)
[X] Compilation (make)
[ ] Installation (make install)

Build environment

• OS: Mac OS
• OS version: 11.6 (20G165)
• Type of system: laptop

ANTs version

Ecphorella

Build configuration and logs

• build.log: build.log
• CMakeCache.txt: CMakeCache.txt
• CMakeFiles/CMakeError.log: CMakeError.log
• CMakeFiles/CMakeOutput.log: CMakeOutput.log

Additional context

Hi there,

I am trying to build ANTs however I keep running into the following error:

-- Fetching "file:///~/ANTs/.ExternalData/MD5/37aaa33029410941bf4affff0479fa18"
-- Fetching "http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&checksum=37aaa33029410941bf4affff0479fa18"
-- Fetching "https://data.kitware.com:443/api/v1/file/hashsum/MD5/37aaa33029410941bf4affff0479fa18/download"
-- Fetching "http://www.itk.org/files/ExternalData/MD5/37aaa33029410941bf4affff0479fa18"
-- [download 100% complete]
* Closing connection 0
CMake Error at /usr/local/Cellar/cmake/3.21.3_1/share/cmake/Modules/ExternalData.cmake:1181 (message):
  

  Object MD5=37aaa33029410941bf4affff0479fa18 not found at:

    file:///~/ANTs/.ExternalData/MD5/37aaa33029410941bf4affff0479fa18 ("Couldn't read a file:// file")
    http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&checksum=37aaa33029410941bf4affff0479fa18 ("HTTP response code said error")
    https://data.kitware.com:443/api/v1/file/hashsum/MD5/37aaa33029410941bf4affff0479fa18/download ("HTTP response code said error")
    http://www.itk.org/files/ExternalData/MD5/37aaa33029410941bf4affff0479fa18 ("HTTP response code said error")


make[5]: *** [ExternalData/TestData/Data/r16slice.nii.gz-hash-stamp] Error 1
make[4]: *** [Examples/TestSuite/CMakeFiles/ANTSFetchData.dir/all] Error 2
make[3]: *** [all] Error 2
make[2]: *** [ANTS-prefix/src/ANTS-stamp/ANTS-build] Error 2
make[1]: *** [CMakeFiles/ANTS.dir/all] Error 2

This seems to be a similar (but slightly different issue) to #1236. I have also made sure that xcode-select (v2384), brew (v3.2.15), cmake (v3.21.3), and make (v3.81) are all up to date.

Thanks!

[cookpa]

I think it's because we need to convert all the .md5 to .sha512

#1236 #1237

[cookpa]

#1237

[gourdchen]

I have the same problem

[cookpa]

@gourdchen do you have the latest code? Feel free to open a new issue using the "Build problems" template

[gourdchen]

@cookpa yes, I use the latest release.

[anagrammarian]

I just added the -DBUILD_TESTING=OFF and built it successfully on ubuntu 18.04 which I just finally upgraded from 14.04 (long long wait and story). However, it is taking a really long time to even do affine (previously for the same data took about 1.5 min now 13 or 14 min) and even more for nonlinear. Is there anything which has changed in ANTs or some weird ANTS 18.04 specific thing I need to know? It is still running (40 min later, normal time to finish my code is 13-15 min). Thanks

[anagrammarian]

And to be clear, the python code etc I am running and the input image are identical to before the upgrade.

[ntustison]

This appears to be unrelated to the original posting. Please open a separate issue.

[anagrammarian]

Ok. It is related in that I did use the -DBUILD_TESTING=OFF trick to get it to compile as suggested by this thread. Maybe that suggestion is in another thread. My bad.

[ntustison]

But the context is different. Please open a separate issue.

[anagrammarian]

Ok, will do

[cookpa]

We fixed this issue, but the tests may still fail if your build process can't download the test data at run time. The long run times are unrelated. You'd need to share the exact command as run and preferably the data (or at least as much information as possible about the data).