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Rerun SingleR analysis with RMS libraries #224

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allyhawkins opened this issue Jun 28, 2023 · 0 comments · Fixed by #228
Closed

Rerun SingleR analysis with RMS libraries #224

allyhawkins opened this issue Jun 28, 2023 · 0 comments · Fixed by #228
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@allyhawkins
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We would like to evaluate using SingleR to annotate cell types on a solid tumor type. We already have a template R notebook, SingleR-non-immune-ref-comparison.Rmd, which we used to evaluate SingleR on libraries from a liquid tumor type. We just need to render that notebook with a few of the libraries from the RMS project.

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