From 95f1404bc80aa655c5b1b9106a35848bf8943170 Mon Sep 17 00:00:00 2001
From: Joshua Shapiro <josh.shapiro@ccdatalab.org>
Date: Mon, 8 Jul 2024 17:04:11 -0400
Subject: [PATCH] install htslib manually to avoid build error

---
 Dockerfile | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/Dockerfile b/Dockerfile
index e5a0d60..f72fb65 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -10,6 +10,9 @@ LABEL org.opencontainers.image.source https://github.com/AlexsLemonade/scpcaTool
 ENV RENV_CONFIG_CACHE_ENABLED FALSE
 RUN Rscript -e "install.packages(c('renv'))"
 
+# Install Rhtslib manually for renv/Bioc incompatibility (possibly temporary)
+RUN Rscript -e "BiocManager::install('Rhtslib')"
+
 COPY docker/renv_slim.lock renv.lock
 # restore renv and remove cache files
 RUN Rscript -e 'renv::restore()'\