diff --git a/docker/renv_reports.lock b/docker/renv_reports.lock
index 37890e0..07f1fb6 100644
--- a/docker/renv_reports.lock
+++ b/docker/renv_reports.lock
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diff --git a/docker/renv_seurat.lock b/docker/renv_seurat.lock
index 07b9cde..93110cc 100644
--- a/docker/renv_seurat.lock
+++ b/docker/renv_seurat.lock
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diff --git a/docker/renv_slim.lock b/docker/renv_slim.lock
index b3c30d1..c5fe1fb 100644
--- a/docker/renv_slim.lock
+++ b/docker/renv_slim.lock
@@ -158,7 +158,7 @@
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@@ -1661,14 +1661,14 @@
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@@ -1795,7 +1795,7 @@
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@@ -2999,7 +3000,7 @@
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@@ -3024,10 +3025,10 @@
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diff --git a/docker/renv_zellkonverter.lock b/docker/renv_zellkonverter.lock
index f0f3eaa..9ace858 100644
--- a/docker/renv_zellkonverter.lock
+++ b/docker/renv_zellkonverter.lock
@@ -156,18 +156,18 @@
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@@ -183,7 +183,7 @@
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@@ -245,7 +245,7 @@
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@@ -260,7 +260,7 @@
         "stats4",
         "utils"
       ],
-      "Hash": "614124bc9fb80d222cfa0d2e3e76c339"
+      "Hash": "171e9becd9bb948b9e64eb3759208c94"
     },
     "GenomeInfoDbData": {
       "Package": "GenomeInfoDbData",
@@ -273,7 +273,7 @@
     },
     "GenomicRanges": {
       "Package": "GenomicRanges",
-      "Version": "1.56.0",
+      "Version": "1.56.1",
       "Source": "Bioconductor",
       "Repository": "Bioconductor 3.19",
       "Requirements": [
@@ -288,7 +288,7 @@
         "stats4",
         "utils"
       ],
-      "Hash": "0fab423e3f49e207681eb404d9182a1e"
+      "Hash": "a3c822ef3c124828e25e7a9611beeb50"
     },
     "HDF5Array": {
       "Package": "HDF5Array",
@@ -315,7 +315,7 @@
     },
     "IRanges": {
       "Package": "IRanges",
-      "Version": "2.38.0",
+      "Version": "2.38.1",
       "Source": "Bioconductor",
       "Repository": "Bioconductor 3.19",
       "Requirements": [
@@ -327,7 +327,7 @@
         "stats4",
         "utils"
       ],
-      "Hash": "836770692f7c8401090519228b93af32"
+      "Hash": "066f3c5d6b022ed62c91ce49e4d8f619"
     },
     "MASS": {
       "Package": "MASS",
@@ -546,7 +546,7 @@
     },
     "S4Arrays": {
       "Package": "S4Arrays",
-      "Version": "1.4.0",
+      "Version": "1.4.1",
       "Source": "Bioconductor",
       "Repository": "Bioconductor 3.19",
       "Requirements": [
@@ -560,11 +560,11 @@
         "methods",
         "stats"
       ],
-      "Hash": "665d1f150ce8a6e7614375eafdbad645"
+      "Hash": "deeed4802c5132e88f24a432a1caf5e0"
     },
     "S4Vectors": {
       "Package": "S4Vectors",
-      "Version": "0.42.0",
+      "Version": "0.42.1",
       "Source": "Bioconductor",
       "Repository": "Bioconductor 3.19",
       "Requirements": [
@@ -575,7 +575,7 @@
         "stats4",
         "utils"
       ],
-      "Hash": "245ac721ca6088200392ea5251db9e3c"
+      "Hash": "86398fc7c5f6be4ba29fe23ed08c2da6"
     },
     "ScaledMatrix": {
       "Package": "ScaledMatrix",
@@ -609,7 +609,7 @@
     },
     "SparseArray": {
       "Package": "SparseArray",
-      "Version": "1.4.1",
+      "Version": "1.4.8",
       "Source": "Bioconductor",
       "Repository": "Bioconductor 3.19",
       "Requirements": [
@@ -626,7 +626,7 @@
         "stats",
         "utils"
       ],
-      "Hash": "c309b75cfb1f52407e40ebbd151af932"
+      "Hash": "97f70ff11c14edd379ee2429228cbb60"
     },
     "SummarizedExperiment": {
       "Package": "SummarizedExperiment",
@@ -707,13 +707,13 @@
     },
     "backports": {
       "Package": "backports",
-      "Version": "1.4.1",
+      "Version": "1.5.0",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R"
       ],
-      "Hash": "c39fbec8a30d23e721980b8afb31984c"
+      "Hash": "e1e1b9d75c37401117b636b7ae50827a"
     },
     "base64enc": {
       "Package": "base64enc",
@@ -916,14 +916,14 @@
     },
     "cli": {
       "Package": "cli",
-      "Version": "3.6.2",
+      "Version": "3.6.3",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "1216ac65ac55ec0058a6f75d7ca0fd52"
+      "Hash": "b21916dd77a27642b447374a5d30ecf3"
     },
     "clipr": {
       "Package": "clipr",
@@ -998,7 +998,7 @@
     },
     "crayon": {
       "Package": "crayon",
-      "Version": "1.5.2",
+      "Version": "1.5.3",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
@@ -1006,7 +1006,7 @@
         "methods",
         "utils"
       ],
-      "Hash": "e8a1e41acf02548751f45c718d55aa6a"
+      "Hash": "859d96e65ef198fd43e82b9628d593ef"
     },
     "curl": {
       "Package": "curl",
@@ -1059,14 +1059,14 @@
     },
     "digest": {
       "Package": "digest",
-      "Version": "0.6.35",
+      "Version": "0.6.36",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "698ece7ba5a4fa4559e3d537e7ec3d31"
+      "Hash": "fd6824ad91ede64151e93af67df6376b"
     },
     "dir.expiry": {
       "Package": "dir.expiry",
@@ -1104,7 +1104,7 @@
     },
     "dqrng": {
       "Package": "dqrng",
-      "Version": "0.4.0",
+      "Version": "0.4.1",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
@@ -1113,7 +1113,7 @@
         "Rcpp",
         "sitmo"
       ],
-      "Hash": "b31198e6268008976689b196bf9d883f"
+      "Hash": "6d7b942d8f615705f89a7883998fc839"
     },
     "dtplyr": {
       "Package": "dtplyr",
@@ -1153,14 +1153,14 @@
     },
     "evaluate": {
       "Package": "evaluate",
-      "Version": "0.23",
+      "Version": "0.24.0",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "methods"
       ],
-      "Hash": "daf4a1246be12c1fa8c7705a0935c1a0"
+      "Hash": "a1066cbc05caee9a4bf6d90f194ff4da"
     },
     "fansi": {
       "Package": "fansi",
@@ -1568,14 +1568,14 @@
     },
     "highr": {
       "Package": "highr",
-      "Version": "0.10",
+      "Version": "0.11",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "xfun"
       ],
-      "Hash": "06230136b2d2b9ba5805e1963fa6e890"
+      "Hash": "d65ba49117ca223614f71b60d85b8ab7"
     },
     "hms": {
       "Package": "hms",
@@ -1702,7 +1702,7 @@
     },
     "knitr": {
       "Package": "knitr",
-      "Version": "1.46",
+      "Version": "1.48",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
@@ -1714,7 +1714,7 @@
         "xfun",
         "yaml"
       ],
-      "Hash": "6e008ab1d696a5283c79765fa7b56b47"
+      "Hash": "acf380f300c721da9fde7df115a5f86f"
     },
     "labeling": {
       "Package": "labeling",
@@ -1768,7 +1768,7 @@
     },
     "limma": {
       "Package": "limma",
-      "Version": "3.60.0",
+      "Version": "3.60.3",
       "Source": "Bioconductor",
       "Repository": "Bioconductor 3.19",
       "Requirements": [
@@ -1780,18 +1780,18 @@
         "stats",
         "utils"
       ],
-      "Hash": "eb9369d11da98acc7f7ca4cdab0ee3d8"
+      "Hash": "229b85fef79976cc42c4fbcaf25eb44a"
     },
     "locfit": {
       "Package": "locfit",
-      "Version": "1.5-9.9",
+      "Version": "1.5-9.10",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "lattice"
       ],
-      "Hash": "3885127e04b35dafded049075057ad83"
+      "Hash": "7d8e0ac914051ca0254332387d9b5816"
     },
     "lubridate": {
       "Package": "lubridate",
@@ -2081,14 +2081,14 @@
     },
     "ps": {
       "Package": "ps",
-      "Version": "1.7.6",
+      "Version": "1.7.7",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "dd2b9319ee0656c8acf45c7f40c59de7"
+      "Hash": "878b467580097e9c383acbb16adab57a"
     },
     "purrr": {
       "Package": "purrr",
@@ -2197,7 +2197,7 @@
     },
     "reprex": {
       "Package": "reprex",
-      "Version": "2.1.0",
+      "Version": "2.1.1",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
@@ -2215,7 +2215,7 @@
         "utils",
         "withr"
       ],
-      "Hash": "1425f91b4d5d9a8f25352c44a3d914ed"
+      "Hash": "97b1d5361a24d9fb588db7afe3e5bcbf"
     },
     "reshape2": {
       "Package": "reshape2",
@@ -2232,7 +2232,7 @@
     },
     "reticulate": {
       "Package": "reticulate",
-      "Version": "1.37.0",
+      "Version": "1.38.0",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
@@ -2250,7 +2250,7 @@
         "utils",
         "withr"
       ],
-      "Hash": "9465d3bc6ec44eeaa52527ac2cba4020"
+      "Hash": "8810e64cfe0240afe926617a854a38a4"
     },
     "rhdf5": {
       "Package": "rhdf5",
@@ -2277,14 +2277,14 @@
     },
     "rlang": {
       "Package": "rlang",
-      "Version": "1.1.3",
+      "Version": "1.1.4",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "utils"
       ],
-      "Hash": "42548638fae05fd9a9b5f3f437fbbbe2"
+      "Hash": "3eec01f8b1dee337674b2e34ab1f9bc1"
     },
     "rmarkdown": {
       "Package": "rmarkdown",
@@ -2606,15 +2606,16 @@
     },
     "textshaping": {
       "Package": "textshaping",
-      "Version": "0.3.7",
+      "Version": "0.4.0",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
         "R",
         "cpp11",
+        "lifecycle",
         "systemfonts"
       ],
-      "Hash": "997aac9ad649e0ef3b97f96cddd5622b"
+      "Hash": "5142f8bc78ed3d819d26461b641627ce"
     },
     "tibble": {
       "Package": "tibble",
@@ -2885,7 +2886,7 @@
     },
     "xfun": {
       "Package": "xfun",
-      "Version": "0.44",
+      "Version": "0.45",
       "Source": "Repository",
       "Repository": "RSPM",
       "Requirements": [
@@ -2893,7 +2894,7 @@
         "stats",
         "tools"
       ],
-      "Hash": "317a0538d32f4a009658bcedb7923f4b"
+      "Hash": "ca59c87fe305b16a9141a5874c3a7889"
     },
     "xml2": {
       "Package": "xml2",
@@ -2910,14 +2911,14 @@
     },
     "yaml": {
       "Package": "yaml",
-      "Version": "2.3.8",
+      "Version": "2.3.9",
       "Source": "Repository",
       "Repository": "RSPM",
-      "Hash": "29240487a071f535f5e5d5a323b7afbd"
+      "Hash": "9cb28d11799d93c953f852083d55ee9e"
     },
     "zellkonverter": {
       "Package": "zellkonverter",
-      "Version": "1.14.0",
+      "Version": "1.14.1",
       "Source": "Bioconductor",
       "Repository": "Bioconductor 3.19",
       "Requirements": [
@@ -2932,7 +2933,7 @@
         "reticulate",
         "utils"
       ],
-      "Hash": "9c1f8622af583e7479913287d86533e8"
+      "Hash": "656ccd4d9874cf077f9a688b38d03a63"
     },
     "zlibbioc": {
       "Package": "zlibbioc",
diff --git a/docker/requirements.txt b/docker/requirements.txt
index f8b1ee3..a45e63c 100644
--- a/docker/requirements.txt
+++ b/docker/requirements.txt
@@ -7,8 +7,8 @@
 absl-py==2.1.0
 aiohttp==3.9.5
 aiosignal==1.3.1
-anndata==0.10.7
-array-api-compat==1.6
+anndata==0.10.8
+array-api-compat==1.7.1
 async-timeout==4.0.3
 attrs==23.2.0
 chex==0.1.86
@@ -17,81 +17,81 @@ contourpy==1.2.1
 cycler==0.12.1
 docrep==0.3.2
 etils==1.7.0
-exceptiongroup==1.2.0
-filelock==3.13.4
-flax==0.8.2
-fonttools==4.51.0
+exceptiongroup==1.2.1
+filelock==3.15.4
+flax==0.8.5
+fonttools==4.53.1
 frozenlist==1.4.1
-fsspec==2024.3.1
+fsspec==2024.6.1
 h5py==3.11.0
 idna==3.7
 importlib-resources==6.4.0
-jax==0.4.26
-jaxlib==0.4.26
-jinja2==3.1.3
-joblib==1.4.0
+jax==0.4.30
+jaxlib==0.4.30
+jinja2==3.1.4
+joblib==1.4.2
 kiwisolver==1.4.5
 legacy-api-wrap==1.4
 lightning==2.1.4
-lightning-utilities==0.11.2
-llvmlite==0.42.0
+lightning-utilities==0.11.3.post0
+llvmlite==0.43.0
 markdown-it-py==3.0.0
 markupsafe==2.1.5
-matplotlib==3.8.4
+matplotlib==3.9.1
 mdurl==0.1.2
 ml-collections==0.1.1
 ml-dtypes==0.4.0
 mpmath==1.3.0
 msgpack==1.0.8
-mudata==0.2.3
+mudata==0.2.4
 multidict==6.0.5
 multipledispatch==1.0.0
 natsort==8.4.0
 nest-asyncio==1.6.0
 networkx==3.3
-numba==0.59.1
+numba==0.60.0
 numpy==1.26.4
-numpyro==0.14.0
+numpyro==0.15.0
 opt-einsum==3.3.0
 optax==0.2.2
-orbax-checkpoint==0.5.9
-packaging==24.0
+orbax-checkpoint==0.5.20
+packaging==24.1
 pandas==2.2.2
 patsy==0.5.6
-pillow==10.3.0
-protobuf==5.26.1
-pygments==2.17.2
-pynndescent==0.5.12
+pillow==10.4.0
+protobuf==5.27.2
+pygments==2.18.0
+pynndescent==0.5.13
 pyparsing==3.1.2
 pyro-api==0.1.2
-pyro-ppl==1.9.0
+pyro-ppl==1.9.1
 python-dateutil==2.9.0.post0
-pytorch-lightning==2.2.2
+pytorch-lightning==2.3.3
 pytz==2024.1
 pyyaml==6.0.1
 rich==13.7.1
-scanpy==1.10.1
-scikit-learn==1.4.2
-scipy==1.13.0
-scvi-tools==1.1.2
+scanpy==1.10.2
+scikit-learn==1.5.1
+scipy==1.14.0
+scvi-tools==1.1.5
 seaborn==0.13.2
 session-info==1.0.0
 six==1.16.0
 statsmodels==0.14.2
 stdlib-list==0.10.0
-sympy==1.12
-tensorstore==0.1.56
-threadpoolctl==3.4.0
+sympy==1.13.0
+tensorstore==0.1.63
+threadpoolctl==3.5.0
 toolz==0.12.1
-torch==2.2.2
-torchmetrics==1.3.2
-torchvision==0.17.2
-tqdm==4.66.2
-typing-extensions==4.11.0
+torch==2.3.1
+torchmetrics==1.4.0.post0
+torchvision==0.18.1
+tqdm==4.66.4
+typing-extensions==4.12.2
 tzdata==2024.1
 umap-learn==0.5.6
 yarl==1.9.4
-zipp==3.18.1
+zipp==3.19.2
 
 # The following packages are considered to be unsafe in a requirements file:
 # setuptools
diff --git a/docker/requirements_anndata.txt b/docker/requirements_anndata.txt
index 071e935..78ed103 100644
--- a/docker/requirements_anndata.txt
+++ b/docker/requirements_anndata.txt
@@ -4,16 +4,16 @@
 #
 #    pip-compile --no-annotate --output-file=requirements_anndata.txt --strip-extras requirements_anndata.in
 #
-anndata==0.10.7
-array-api-compat==1.6
+anndata==0.10.8
+array-api-compat==1.7.1
 exceptiongroup==1.2.1
 h5py==3.11.0
 natsort==8.4.0
-numpy==1.26.4
-packaging==24.0
+numpy==2.0.0
+packaging==24.1
 pandas==2.2.2
 python-dateutil==2.9.0.post0
 pytz==2024.1
-scipy==1.13.0
+scipy==1.14.0
 six==1.16.0
 tzdata==2024.1
diff --git a/docker/requirements_scvi.txt b/docker/requirements_scvi.txt
index cb1359c..eb32733 100644
--- a/docker/requirements_scvi.txt
+++ b/docker/requirements_scvi.txt
@@ -7,8 +7,8 @@
 absl-py==2.1.0
 aiohttp==3.9.5
 aiosignal==1.3.1
-anndata==0.10.7
-array-api-compat==1.6
+anndata==0.10.8
+array-api-compat==1.7.1
 async-timeout==4.0.3
 attrs==23.2.0
 chex==0.1.86
@@ -18,79 +18,79 @@ cycler==0.12.1
 docrep==0.3.2
 etils==1.7.0
 exceptiongroup==1.2.1
-filelock==3.13.4
-flax==0.8.2
-fonttools==4.51.0
+filelock==3.15.4
+flax==0.8.5
+fonttools==4.53.1
 frozenlist==1.4.1
-fsspec==2024.3.1
+fsspec==2024.6.1
 h5py==3.11.0
 idna==3.7
 importlib-resources==6.4.0
-jax==0.4.26
-jaxlib==0.4.26
-jinja2==3.1.3
-joblib==1.4.0
+jax==0.4.30
+jaxlib==0.4.30
+jinja2==3.1.4
+joblib==1.4.2
 kiwisolver==1.4.5
 legacy-api-wrap==1.4
 lightning==2.1.4
-lightning-utilities==0.11.2
-llvmlite==0.42.0
+lightning-utilities==0.11.3.post0
+llvmlite==0.43.0
 markdown-it-py==3.0.0
 markupsafe==2.1.5
-matplotlib==3.8.4
+matplotlib==3.9.1
 mdurl==0.1.2
 ml-collections==0.1.1
 ml-dtypes==0.4.0
 mpmath==1.3.0
 msgpack==1.0.8
-mudata==0.2.3
+mudata==0.2.4
 multidict==6.0.5
 multipledispatch==1.0.0
 natsort==8.4.0
 nest-asyncio==1.6.0
 networkx==3.3
-numba==0.59.1
+numba==0.60.0
 numpy==1.26.4
-numpyro==0.14.0
+numpyro==0.15.0
 opt-einsum==3.3.0
 optax==0.2.2
-orbax-checkpoint==0.5.10
-packaging==24.0
+orbax-checkpoint==0.5.20
+packaging==24.1
 pandas==2.2.2
 patsy==0.5.6
-pillow==10.3.0
-protobuf==5.26.1
-pygments==2.17.2
-pynndescent==0.5.12
+pillow==10.4.0
+protobuf==5.27.2
+pygments==2.18.0
+pynndescent==0.5.13
 pyparsing==3.1.2
 pyro-api==0.1.2
-pyro-ppl==1.9.0
+pyro-ppl==1.9.1
 python-dateutil==2.9.0.post0
-pytorch-lightning==2.2.2
+pytorch-lightning==2.3.3
 pytz==2024.1
 pyyaml==6.0.1
 rich==13.7.1
-scanpy==1.10.1
-scikit-learn==1.4.2
-scipy==1.13.0
-scvi-tools==1.1.2
+scanpy==1.10.2
+scikit-learn==1.5.1
+scipy==1.14.0
+scvi-tools==1.1.5
 seaborn==0.13.2
 session-info==1.0.0
 six==1.16.0
 statsmodels==0.14.2
 stdlib-list==0.10.0
-sympy==1.12
-tensorstore==0.1.56
-threadpoolctl==3.4.0
+sympy==1.13.0
+tensorstore==0.1.63
+threadpoolctl==3.5.0
 toolz==0.12.1
-torch==2.2.2
-torchmetrics==1.3.2
-tqdm==4.66.2
-typing-extensions==4.11.0
+torch==2.3.1
+torchmetrics==1.4.0.post0
+tqdm==4.66.4
+typing-extensions==4.12.2
 tzdata==2024.1
 umap-learn==0.5.6
 yarl==1.9.4
-zipp==3.18.1
+zipp==3.19.2
 
 # The following packages are considered to be unsafe in a requirements file:
 # setuptools