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sessionInfo_3_subset_analysis_CD8_TEM.txt
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sessionInfo_3_subset_analysis_CD8_TEM.txt
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R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C LC_TIME=English_United States.utf8
attached base packages:
[1] tools stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggnewscale_0.4.9 pals_1.7 RColorBrewer_1.1-3 kableExtra_1.3.4 gridExtra_2.3 scRepertoire_1.8.0 lubridate_1.9.2
[8] forcats_1.0.0 stringr_1.5.0 dplyr_1.1.2 purrr_1.0.1 readr_2.1.4 tidyr_1.3.0 tibble_3.2.1
[15] tidyverse_2.0.0 ggprism_1.0.4 patchwork_1.1.2 ggpubr_0.5.0 ggplot2_3.4.2 SeuratObject_4.1.3 Seurat_4.1.1
loaded via a namespace (and not attached):
[1] utf8_1.2.2 reticulate_1.28 tidyselect_1.2.0 htmlwidgets_1.6.2 grid_4.2.2
[6] Rtsne_0.16 munsell_0.5.0 ragg_1.2.5 codetools_0.2-18 ica_1.0-3
[11] future_1.32.0 miniUI_0.1.1.1 withr_2.5.0 spatstat.random_3.1-4 colorspace_2.1-0
[16] progressr_0.13.0 Biobase_2.58.0 highr_0.10 knitr_1.42 ggalluvial_0.12.5
[21] rstudioapi_0.14 stats4_4.2.2 SingleCellExperiment_1.20.1 ROCR_1.0-11 ggsignif_0.6.4
[26] tensor_1.5 listenv_0.9.0 labeling_0.4.2 MatrixGenerics_1.10.0 GenomeInfoDbData_1.2.9
[31] polyclip_1.10-4 farver_2.1.1 parallelly_1.35.0 vctrs_0.6.2 generics_0.1.3
[36] xfun_0.36 timechange_0.2.0 R6_2.5.1 doParallel_1.0.17 GenomeInfoDb_1.34.9
[41] graphlayouts_0.8.4 VGAM_1.1-8 cachem_1.0.7 bitops_1.0-7 spatstat.utils_3.0-2
[46] DelayedArray_0.24.0 promises_1.2.0.1 scales_1.2.1 ggraph_2.1.0 rgeos_0.6-2
[51] gtable_0.3.3 globals_0.16.2 processx_3.8.1 goftest_1.2-3 tidygraph_1.2.3
[56] rlang_1.1.0 systemfonts_1.0.4 GlobalOptions_0.1.2 splines_4.2.2 rstatix_0.7.2
[61] lazyeval_0.2.2 dichromat_2.0-0.1 spatstat.geom_3.1-0 broom_1.0.4 yaml_2.3.7
[66] reshape2_1.4.4 abind_1.4-5 backports_1.4.1 httpuv_1.6.9 cubature_2.0.4.6
[71] ellipsis_0.3.2 spatstat.core_2.4-4 jquerylib_0.1.4 BiocGenerics_0.44.0 ggridges_0.5.4
[76] Rcpp_1.0.10 plyr_1.8.8 progress_1.2.2 zlibbioc_1.44.0 RCurl_1.98-1.9
[81] ps_1.7.5 prettyunits_1.1.1 rpart_4.1.19 deldir_1.0-6 pbapply_1.7-0
[86] viridis_0.6.2 cowplot_1.1.1 S4Vectors_0.36.1 zoo_1.8-11 SummarizedExperiment_1.28.0
[91] ggrepel_0.9.3 cluster_2.1.4 magrittr_2.0.3 magick_2.7.4 data.table_1.14.6
[96] scattermore_0.8 SparseM_1.81 circlize_0.4.15 lmtest_0.9-40 RANN_2.6.1
[101] truncdist_1.0-2 fitdistrplus_1.1-11 matrixStats_0.63.0 gsl_2.1-8 hms_1.1.3
[106] mime_0.12 evaluate_0.20 xtable_1.8-4 readxl_1.4.2 IRanges_2.32.0
[111] shape_1.4.6 compiler_4.2.2 maps_3.4.1 crayon_1.5.2 KernSmooth_2.23-20
[116] htmltools_0.5.4 mgcv_1.8-41 later_1.3.0 tzdb_0.3.0 powerTCR_1.18.0
[121] DBI_1.1.3 tweenr_2.0.2 MASS_7.3-58.1 MAST_1.24.1 Matrix_1.5-3
[126] car_3.1-2 permute_0.9-7 cli_3.6.0 evd_2.3-6.1 parallel_4.2.2
[131] igraph_1.3.5 GenomicRanges_1.50.2 pkgconfig_2.0.3 sp_1.6-0 plotly_4.10.1
[136] spatstat.sparse_3.0-1 xml2_1.3.3 foreach_1.5.2 svglite_2.1.1 bslib_0.4.2
[141] webshot_0.5.4 stringdist_0.9.10 XVector_0.38.0 rvest_1.0.3 callr_3.7.3
[146] digest_0.6.31 sctransform_0.3.5 RcppAnnoy_0.0.20 vegan_2.6-4 spatstat.data_3.0-1
[151] rmarkdown_2.21 cellranger_1.1.0 leiden_0.4.3 uwot_0.1.11 evmix_2.12
[156] shiny_1.7.4 lifecycle_1.0.3 nlme_3.1-161 jsonlite_1.8.4 carData_3.0-5
[161] mapproj_1.2.11 viridisLite_0.4.1 fansi_1.0.4 pillar_1.9.0 lattice_0.20-45
[166] fastmap_1.1.0 httr_1.4.6 survival_3.5-0 glue_1.6.2 png_0.1-8
[171] iterators_1.0.14 sass_0.4.5 ggforce_0.4.1 stringi_1.7.12 textshaping_0.3.6
[176] irlba_2.3.5.1 future.apply_1.10.0