Network in online GeneMANIA looks different after Cytoscape import

[shraddhapai]

No description provided.

[shraddhapai]

I uploaded a list of 119 human genes into the online GeneMANIA interface. The default network view shows far fewer nodes than 119 (figure below).

I then downloaded the network and interactions from the website and imported the network into Cytoscape. The resulting network has 138 nodes (presumably the 119 I entered + some strong interactions). Ignore the layout and colour-coding of nodes/edges - I customized those.

Just wondering why the networks look different. It's puzzling to see so few nodes on the screen. If num nodes are deliberately limited, there needs to be a prominent message that indicates it's the case. If there was such a message, it wasn't visible to me.

Thanks!

[maxkfranz]

What is your input?

• Gene list
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