| Time | Description |
|---|---|
| 10:00-10:30 | Jenni Hultman: Introduction (including general structure of the course and group work) |
| 10:30-10:45 | Antti Karkman: Basic usage of computing service at CSC |
| 10:45-11:15 | Antti Karkman: Working with the command line - hands-on |
| 11.15-11:30 | Antti Karkman: Setting up the course folder |
| 11:30-12:00 | David Fewer: Introduction to the Cyanobacterial genomes analyzed during the course |
| 12:00-13:00 | Lunch |
| 13:00-13:15 | Antti Karkman: Sequencing 101 |
| 13:15-13:30 | Jenni Hultman: Seq trimming and QC lecture |
| 13:30-14:30 | ALL: Hands-on QC and trimming and MBDP coffee break at 14:00 |
| 14:30-14:45 | Jenni Hultman: Assembly lecture |
| 14:45-15:30 | Endrews Delbaje: Assembly hands-on |
| 15:30-16:00 | Students: Student presentations |
| Time | Description |
|---|---|
| 08:30-09:00 | Tania Shishido Joutsen: Assembly QC lecture |
| 09:00-09:30 | Endrews Delbaje: Cleaning the genome |
| 09:30-10:00 | Endrews Delbaje: Assembly QC hands-on |
| 10:00-10:30 | Endrews Delbaje: Annotation lecture |
| 10:30-12:00 | Endrews Delbaje: Annotation hands-on |
| 12:00-13:00 | Lunch |
| 13:00-16:00 | Endrews Delbaje:KBase tutorial and hands-on |
| Time | Description |
|---|---|
| 08:30-09:15 | Antti Karkman: Introduction to Anvi'o |
| 09:15-12:00 | ALL: Pangenomics hands-on |
| 12:00-13:00 | Lunch: |
| 13:00-15:00 | ALL: Population genomics hands-on cont' and MBDP coffee break at 14:00 |
| 15:00-16:00 | Time for groupwork |
| Time | Description |
|---|---|
| 08:30-10:00 | Time for groupwork |
| 10:00-10:30 | Tania Shishido Joutsen: Secondary metabolite lecture |
| 10:30-12:00 | Tania Shishido Joutsen: Secondary metabolite hands-on: antiSMASH and BiG-SCAPE/CORASON |
| 12:00-13:00 | Lunch |
| 13:00-14:30 | Tania Shishido Joutsen Secondary metabolite hands-on: BiG-SCAPE/CORASON |
| 14:30-16:00 | Time for groupwork |
| Time | Description |
|---|---|
| 08:30-12:00 | ALL: Groupwork presentations |
| 12:00-13:00 | Lunch |
| 13:00-15:30 | Q&A & Feedback and MBDP coffee break at 14:00 |