Merge pull request #54 from Mayrlab/dev

resolves #53
Mayrlab · Aug 24, 2022 · efa666f · efa666f
2 parents 9ef4c13 + fd8ed66
commit efa666f
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/Snakefile b/Snakefile
@@ -36,6 +36,10 @@ message("[INFO] Loading sample data...")
 samples = pd.read_csv(config['sample_file'], index_col='sample_id')
 message("[INFO] Loaded %d samples." % len(samples.index))
 
+# conform cell_annots for input
+if config['cell_annots'] is None:
+    config['cell_annots'] = []
+
 wildcard_constraints:
     sample_id=config['sample_regex']