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And I got an error in process trinotate.
My .command.out from process trinotate is this.
-- Running Trinotate --
memory
memory
-- Ending run of Trinotate --
-- Loading hits and predictions to sqlite database... --
memory
memory
memory
memory
memory
No transmembrane domains (tmhmm)
No Signal-P
No rnammer results
-- Loading finished --
-- Generating report... --
-- Report generated --
-- Creating GO file from XLS... --
-- Done with the GO --
-- Creating KEGG file from XLS... --
-- Done with the KEGG --
-- Creating eggNOG file from XLS... --
Since there is no output after the following process (e.g. the message "Done with the eggNOG"), I thought there was a problem with this command. However, when I ran this command in a different terminal, no error occurred.
Interesting. Could I see your XLS file that was generated by Trinotate? That way I can troubleshoot and see why the code is not working. My email is r.rivera /@/ lrz.uni-muenchen.de. Thanks
Hi Ramon,
I run full pipeline by foolowing command.
And I got an error in process trinotate.
My .command.out from process trinotate is this.
Since there is no output after the following process (e.g. the message "Done with the eggNOG"), I thought there was a problem with this command. However, when I ran this command in a different terminal, no error occurred.
Is there any reason for this error?
My TransPi version is v1.3.0-rc.
Thank you.
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