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Dear author
I found the following error, when i ran the test command ./nextflow run TransPi.nf --all -profile docker,test --outdir Results_test
the raising error showed that uniprot_metazoa_33208.fasta is missing.
I traced back to the database, and found the following error. The error may due to the api changes in uniprot database, when I ran precheck_TransPi.sh
hope you can help with this issue.
The text was updated successfully, but these errors were encountered:
Dear dppss90008,
please check issue #52
the rest api changed and you have to use a legacy option. The instructions to solve this issue can be found there (in issue #52)
cheers
Sergio
Sorry, something went wrong.
Dear Sergio,
I tried replacing the old URL with "https://legacy.uniprot.org/uniprot/?query=taxonomy:33208&format=fasta&compress=yes&include=no".
But it still not work. It seems that the URL you provided is no longer valid.
CH
Hmm, I was afraid this will be case at some point but not now :-(
I will try to figure out how to do it now but I may need some time. Will post it back here.
I drafted a possible solution in issue #52. Please report if it worked.
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Dear author
I found the following error, when i ran the test command
./nextflow run TransPi.nf --all -profile docker,test --outdir Results_test
the raising error showed that uniprot_metazoa_33208.fasta is missing.
I traced back to the database, and found the following error.
The error may due to the api changes in uniprot database, when I ran precheck_TransPi.sh
hope you can help with this issue.
The text was updated successfully, but these errors were encountered: