Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

What organisms is this designed for? #124

Open
tseemann opened this issue Aug 17, 2024 · 1 comment
Open

What organisms is this designed for? #124

tseemann opened this issue Aug 17, 2024 · 1 comment
Labels
question Further information is requested

Comments

@tseemann
Copy link

Description of feature

It is unclear if this pipeline will work on any organism assembly?

Is it haploid genomes only?
Is it especially for bacteria?
@tseemann tseemann added the enhancement New feature or request label Aug 17, 2024
@GallVp GallVp added question Further information is requested and removed enhancement New feature or request labels Aug 18, 2024
@GallVp
Copy link
Member

GallVp commented Aug 18, 2024

Hi @tseemann

At Plant&Food we have been using the pipeline to QC genomes of plants, animals, and fungi. It was also tested with a bacterial genome.

We have also used it on diploid genomes. The two haplotypes can be processed in parallel by inputting them as two fasta files.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
question Further information is requested
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@tseemann @GallVp