diff --git a/pkg/R/compartmental-models.R b/pkg/R/compartmental-models.R index e17cc5a..dd8d5b7 100644 --- a/pkg/R/compartmental-models.R +++ b/pkg/R/compartmental-models.R @@ -49,9 +49,13 @@ require(rcolgem, quietly=TRUE) sampleStates, integrationMethod=integrationMethod # , n.reps=nreps --this isn't a parameter in rcolgem's simulate.binary.dated.tree.fgy ) - return(tree) + phy <- tree[[1]] + class(phy) <- 'phylo' + return(phy) + # return(tree) # https://github.com/cran/ape/blob/master/R/rtree.R converting tree result into an ape phylo object phy + tree <- tree[[1]] phy <- list(edge=tree$edge, edge.length=tree$edge.length) if (is.null(tree$tip.label)) tree$tip.label <- paste("t", 1:tree$n) # n = number of tips