diff --git a/annotations.tsv b/annotations.tsv index 7ef05b0..0d5085c 100755 --- a/annotations.tsv +++ b/annotations.tsv @@ -118,6 +118,7 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 23860-0 Qn FHIR H HP:0005518 false 2018-04-03T12:54:22 HPO:nvasilevsky NA NA 0.1 true NA 23860-0 Qn FHIR L HP:0025066 false 2018-04-03T12:54:22 HPO:nvasilevsky NA NA 0.1 true NA 20454-5 Ord FHIR POS HP:0000093 false 2018-04-03T12:57:09 HPO:nvasilevsky 2018-04-06T08:39:16 JGM:Aaron 0.2 true NA +20454-5 Ord FHIR NEG HP:0000093 true 2018-04-03T12:57:09 HPO:nvasilevsky 2018-04-06T08:39:16 JGM:Aaron 0.2 true NA 32167-9 Nom FHIR N HP:0012086 true 2018-04-03T13:00:43 HPO:nvasilevsky NA NA 0.1 true NA 738-5 Ord FHIR POS HP:0001972 false 2018-04-06T09:35:51 JGM:azhang 2018-10-17T08:46:58 JGM:azhang 0.2 true NA 738-5 Ord FHIR NEG HP:0001972 true 2018-04-06T09:35:51 JGM:azhang 2018-10-17T08:46:58 JGM:azhang 0.2 true NA @@ -356,6 +357,7 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 2955-3 Qn FHIR L HP:0012604 false 2018-05-10T14:20:23 HPO:nvasilevsky NA NA 0.1 true NA 1839-0 Qn FHIR H HP:0001987 false 2018-05-10T14:29:50 HPO:nvasilevsky NA NA 0.1 true There is not an Abn ammonia blood level class - should we add that? 1839-0 Qn FHIR L HP:0100493 false 2018-05-10T14:29:50 HPO:nvasilevsky NA NA 0.1 true There is not an Abn ammonia blood level class - should we add that? +1839-0 Qn FHIR N HP:0004364 false 2018-05-10T14:29:50 HPO:nvasilevsky NA NA 0.1 true There is not an Abn ammonia blood level class - should we add that? 600-7 Nom FHIR N HP:0031864 true 2018-05-10T14:41:03 HPO:nvasilevsky NA NA 0.1 true NA 600-7 Nom FHIR POS HP:0031864 false 2018-05-10T14:41:03 HPO:nvasilevsky NA NA 0.1 true NA 600-7 Nom FHIR H HP:0031864 false 2018-05-10T14:41:03 HPO:nvasilevsky NA NA 0.1 true NA @@ -1725,6 +1727,9 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 50205-4 Qn FHIR H HP:0003452 false 2018-06-28T10:07:16 HPO:probinson NA NA 0.1 true NA 50205-4 Qn FHIR L HP:0040303 false 2018-06-28T10:07:16 HPO:probinson NA NA 0.1 true NA 12269-7 Ord FHIR POS HP:0031890 false 2018-07-17T09:25:06 HPO:nvasilevsky NA NA 0.1 true NA +12269-7 Ord FHIR NEG HP:0031890 true 2018-07-17T09:25:06 HPO:nvasilevsky NA NA 0.1 true NA +19161-9 Qn FHIR N HP:0032472 true 2018-07-17T09:25:17 HPO:nvasilevsky NA NA 0.1 true NA +19161-9 Qn FHIR L HP:0032473 false 2018-07-17T09:25:17 HPO:nvasilevsky NA NA 0.1 true NA 19161-9 Qn FHIR H HP:0031890 false 2018-07-17T09:25:17 HPO:nvasilevsky NA NA 0.1 true NA 13658-0 Ord FHIR POS HP:0031890 false 2018-07-17T09:25:27 HPO:nvasilevsky NA NA 0.1 true NA 13658-0 Ord FHIR NEG HP:0031890 true 2018-07-17T09:25:27 HPO:nvasilevsky NA NA 0.1 true NA @@ -2793,8 +2798,11 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 74092-8 Qn FHIR N HP:0012072 true 2018-08-15T15:42:34 OHSU:JP NA NA 0.1 true NA 74092-8 Qn FHIR H HP:0012072 false 2018-08-15T15:42:34 OHSU:JP NA NA 0.1 true NA 10966-0 Ord FHIR NEG HP:0003076 true 2018-08-20T14:31:44 OHSU:JP NA NA 0.1 true NA +10966-0 Ord FHIR POS HP:0003076 false 2018-08-20T14:31:44 OHSU:JP NA NA 0.1 true NA 10967-8 Ord FHIR NEG HP:0003076 true 2018-08-20T14:31:44 OHSU:JP NA NA 0.1 true NA +10967-8 Ord FHIR POS HP:0003076 false 2018-08-20T14:31:44 OHSU:JP NA NA 0.1 true NA 10968-6 Ord FHIR NEG HP:0003076 true 2018-08-20T14:31:44 OHSU:JP NA NA 0.1 true NA +10968-6 Ord FHIR POS HP:0003076 false 2018-08-20T14:31:44 OHSU:JP NA NA 0.1 true NA 12239-0 Ord FHIR POS HP:0010471 false 2018-08-20T14:34:07 OHSU:JP NA NA 0.1 true NA 12239-0 Ord FHIR NEG HP:0010471 true 2018-08-20T14:34:07 OHSU:JP NA NA 0.1 true NA 2520-5 Qn FHIR N HP:0030085 true 2018-08-27T14:28:43 OHSU:JP NA NA 0.1 true NA @@ -2836,9 +2844,9 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 35210-4 Qn FHIR N HP:0012335 true 2018-08-29T12:15:54 HPO:nvasilevsky NA NA 0.1 true NA 35210-4 Qn FHIR L HP:0100507 false 2018-08-29T12:15:54 HPO:nvasilevsky NA NA 0.1 true NA 34637-9 Qn FHIR N HP:0012335 true 2018-08-29T12:28:22 HPO:nvasilevsky NA NA 0.1 true NA -34637-9 Qn FHIR L HP:0012336 false 2018-08-29T12:28:22 HPO:nvasilevsky NA NA 0.1 true NA +34637-9 Qn FHIR L HP:0012446 false 2018-08-29T12:28:22 HPO:nvasilevsky NA NA 0.1 true NA 47547-5 Qn FHIR N HP:0012335 true 2018-08-29T12:28:37 HPO:nvasilevsky NA NA 0.1 true NA -47547-5 Qn FHIR L HP:0012336 false 2018-08-29T12:28:37 HPO:nvasilevsky NA NA 0.1 true NA +47547-5 Qn FHIR L HP:0012446 false 2018-08-29T12:28:37 HPO:nvasilevsky NA NA 0.1 true NA 10364-8 Qn FHIR N HP:0500099 true 2018-08-29T12:35:46 HPO:nvasilevsky NA NA 0.1 true NA 10364-8 Qn FHIR H HP:0500099 false 2018-08-29T12:35:46 HPO:nvasilevsky NA NA 0.1 true NA 12293-7 Ord FHIR POS HP:0410171 false 2018-08-29T12:36:47 HPO:nvasilevsky NA NA 0.1 true NA @@ -2925,7 +2933,7 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 78857-0 Qn FHIR H HP:0031841 false 2018-09-11T16:53:59 HPO:nvasilevsky NA NA 0.1 true NA 35642-8 Ord FHIR POS HP:0410171 false 2018-09-11T17:00:52 HPO:nvasilevsky NA NA 0.1 true NA 35642-8 Ord FHIR NEG HP:0410171 true 2018-09-11T17:00:52 HPO:nvasilevsky NA NA 0.1 true NA -33274-2 Ord FHIR POS HP:0012336 false 2018-09-11T17:57:34 HPO:nvasilevsky NA NA 0.1 true NA +33274-2 Ord FHIR POS HP:0012446 false 2018-09-11T17:57:34 HPO:nvasilevsky NA NA 0.1 true NA 33274-2 Ord FHIR NEG HP:0012335 true 2018-09-11T17:57:34 HPO:nvasilevsky NA NA 0.1 true NA 43717-8 Ord FHIR POS HP:0045045 false 2018-09-12T15:24 OHSU:JP NA NA 0.1 true NA 43717-8 Ord FHIR NEG HP:0045045 true 2018-09-12T15:24 OHSU:JP NA NA 0.1 true NA @@ -2939,7 +2947,7 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 15013-6 Qn FHIR N HP:0004379 true 2018-09-14T09:18:44 JGM:lccarmody NA NA 0.1 true NA 15013-6 Qn FHIR H HP:0010639 false 2018-09-14T09:18:44 JGM:lccarmody NA NA 0.1 true NA 15013-6 Qn FHIR L HP:0010684 false 2018-09-14T09:18:44 JGM:lccarmody NA NA 0.1 true NA -2350-7 Qn FHIR N HP:0011016 true 2018-09-14T09:26:35 JGM:lccarmody 2018-11-19T15:13:43 JGM:azhang 0.2 true NA +2350-7 Qn FHIR N HP:0003076 true 2018-09-14T09:26:35 JGM:lccarmody 2018-11-19T15:13:43 JGM:azhang 0.2 true NA 2350-7 Qn FHIR H HP:0003076 false 2018-09-14T09:26:35 JGM:lccarmody 2018-11-19T15:13:43 JGM:azhang 0.2 true NA 2956-1 Qn FHIR N HP:0012603 true 2018-09-14T09:27:36 JGM:lccarmody NA NA 0.1 true NA 2956-1 Qn FHIR H HP:0012605 false 2018-09-14T09:27:36 JGM:lccarmody NA NA 0.1 true NA @@ -3197,34 +3205,34 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 13609-3 Qn FHIR N HP:0040215 true 2018-09-19T14:30:38 OHSU:JP NA NA 0.1 true copied from: 13608-5 @original comment: 13609-3 Qn FHIR H HP:0000842 false 2018-09-19T14:30:38 OHSU:JP NA NA 0.1 true copied from: 13608-5 @original comment: 13609-3 Qn FHIR L HP:0040216 false 2018-09-19T14:30:38 OHSU:JP NA NA 0.1 true copied from: 13608-5 @original comment: -1491-0 Qn FHIR N HP:0011016 true 2018-09-19T14:32:06 OHSU:JP 2018-11-19T15:14:15 JGM:azhang 0.2 true NA +1491-0 Qn FHIR N HP:0003076 true 2018-09-19T14:32:06 OHSU:JP 2018-11-19T15:14:15 JGM:azhang 0.2 true NA 1491-0 Qn FHIR H HP:0003076 false 2018-09-19T14:32:06 OHSU:JP 2018-11-19T15:14:15 JGM:azhang 0.2 true NA -1495-1 Qn FHIR N HP:0011016 true 2018-09-19T14:32:33 OHSU:JP 2018-11-19T15:14:53 JGM:azhang 0.2 true NA +1495-1 Qn FHIR N HP:0003076 true 2018-09-19T14:32:33 OHSU:JP 2018-11-19T15:14:53 JGM:azhang 0.2 true NA 1495-1 Qn FHIR H HP:0003076 false 2018-09-19T14:32:33 OHSU:JP 2018-11-19T15:14:53 JGM:azhang 0.2 true NA -1505-7 Qn FHIR N HP:0011016 true 2018-09-19T14:32:57 OHSU:JP 2018-11-19T15:15:19 JGM:azhang 0.2 true NA +1505-7 Qn FHIR N HP:0003076 true 2018-09-19T14:32:57 OHSU:JP 2018-11-19T15:15:19 JGM:azhang 0.2 true NA 1505-7 Qn FHIR H HP:0003076 false 2018-09-19T14:32:57 OHSU:JP 2018-11-19T15:15:19 JGM:azhang 0.2 true NA -15076-3 Qn FHIR N HP:0011016 true 2018-09-19T14:33:14 OHSU:JP 2018-11-19T15:15:40 JGM:azhang 0.2 true NA +15076-3 Qn FHIR N HP:0003076 true 2018-09-19T14:33:14 OHSU:JP 2018-11-19T15:15:40 JGM:azhang 0.2 true NA 15076-3 Qn FHIR H HP:0003076 false 2018-09-19T14:33:14 OHSU:JP 2018-11-19T15:15:40 JGM:azhang 0.2 true NA -15077-1 Qn FHIR N HP:0011016 true 2018-09-19T14:33:14 OHSU:JP 2018-11-19T15:16:03 JGM:azhang 0.2 true copied from: 15076-3 @original comment: +15077-1 Qn FHIR N HP:0003076 true 2018-09-19T14:33:14 OHSU:JP 2018-11-19T15:16:03 JGM:azhang 0.2 true copied from: 15076-3 @original comment: 15077-1 Qn FHIR H HP:0003076 false 2018-09-19T14:33:14 OHSU:JP 2018-11-19T15:16:03 JGM:azhang 0.2 true copied from: 15076-3 @original comment: -1509-9 Qn FHIR N HP:0011016 true 2018-09-19T14:33:14 OHSU:JP 2018-11-19T15:16:27 JGM:azhang 0.2 true copied from: 15077-1 @original comment: copied from: 15076-3 @original comment: +1509-9 Qn FHIR N HP:0003076 true 2018-09-19T14:33:14 OHSU:JP 2018-11-19T15:16:27 JGM:azhang 0.2 true copied from: 15077-1 @original comment: copied from: 15076-3 @original comment: 1509-9 Qn FHIR H HP:0003076 false 2018-09-19T14:33:14 OHSU:JP 2018-11-19T15:16:27 JGM:azhang 0.2 true copied from: 15077-1 @original comment: copied from: 15076-3 @original comment: -1555-2 Qn FHIR N HP:0011016 true 2018-09-19T14:38:14 OHSU:JP 2018-11-19T15:16:47 JGM:azhang 0.2 true NA +1555-2 Qn FHIR N HP:0003076 true 2018-09-19T14:38:14 OHSU:JP 2018-11-19T15:16:47 JGM:azhang 0.2 true NA 1555-2 Qn FHIR H HP:0003076 false 2018-09-19T14:38:14 OHSU:JP 2018-11-19T15:16:47 JGM:azhang 0.2 true NA -18227-9 Qn FHIR N HP:0011016 true 2018-09-19T15:44:27 OHSU:JP 2018-11-19T15:17:12 JGM:azhang 0.2 true NA +18227-9 Qn FHIR N HP:0003076 true 2018-09-19T15:44:27 OHSU:JP 2018-11-19T15:17:12 JGM:azhang 0.2 true NA 18227-9 Qn FHIR H HP:0003076 false 2018-09-19T15:44:27 OHSU:JP 2018-11-19T15:17:12 JGM:azhang 0.2 true NA -21305-8 Qn FHIR N HP:0011016 true 2018-09-19T15:45:06 OHSU:JP 2018-11-19T15:17:38 JGM:azhang 0.2 true NA +21305-8 Qn FHIR N HP:0003076 true 2018-09-19T15:45:06 OHSU:JP 2018-11-19T15:17:38 JGM:azhang 0.2 true NA 21305-8 Qn FHIR H HP:0003076 false 2018-09-19T15:45:06 OHSU:JP 2018-11-19T15:17:38 JGM:azhang 0.2 true NA -21306-6 Qn FHIR N HP:0011016 true 2018-09-19T15:45:06 OHSU:JP 2018-11-19T15:18:04 JGM:azhang 0.2 true copied from: 21305-8 @original comment: +21306-6 Qn FHIR N HP:0003076 true 2018-09-19T15:45:06 OHSU:JP 2018-11-19T15:18:04 JGM:azhang 0.2 true copied from: 21305-8 @original comment: 21306-6 Qn FHIR H HP:0003076 false 2018-09-19T15:45:06 OHSU:JP 2018-11-19T15:18:04 JGM:azhang 0.2 true copied from: 21305-8 @original comment: -21307-4 Qn FHIR N HP:0011016 true 2018-09-19T15:45:06 OHSU:JP 2018-11-19T15:18:27 JGM:azhang 0.2 true copied from: 21306-6 @original comment: copied from: 21305-8 @original comment: +21307-4 Qn FHIR N HP:0003076 true 2018-09-19T15:45:06 OHSU:JP 2018-11-19T15:18:27 JGM:azhang 0.2 true copied from: 21306-6 @original comment: copied from: 21305-8 @original comment: 21307-4 Qn FHIR H HP:0003076 false 2018-09-19T15:45:06 OHSU:JP 2018-11-19T15:18:27 JGM:azhang 0.2 true copied from: 21306-6 @original comment: copied from: 21305-8 @original comment: 21004-7 Nom FHIR N HP:0001952 true 2018-09-19T15:45:52 OHSU:JP NA NA 0.1 true NA 21004-7 Nom FHIR NEG HP:0001952 true 2018-09-19T15:45:52 OHSU:JP NA NA 0.1 true NA 21004-7 Nom FHIR L HP:0040270 false 2018-09-19T15:45:52 OHSU:JP NA NA 0.1 true NA -22705-8 Qn FHIR N HP:0011016 true 2018-09-19T15:46:26 OHSU:JP 2018-11-19T15:18:50 JGM:azhang 0.2 true NA +22705-8 Qn FHIR N HP:0003076 true 2018-09-19T15:46:26 OHSU:JP 2018-11-19T15:18:50 JGM:azhang 0.2 true NA 22705-8 Qn FHIR H HP:0003076 false 2018-09-19T15:46:26 OHSU:JP 2018-11-19T15:18:50 JGM:azhang 0.2 true NA -2351-5 Qn FHIR N HP:0011016 true 2018-09-19T15:46:51 OHSU:JP 2018-11-19T15:19:12 JGM:azhang 0.2 true NA +2351-5 Qn FHIR N HP:0003076 true 2018-09-19T15:46:51 OHSU:JP 2018-11-19T15:19:12 JGM:azhang 0.2 true NA 2351-5 Qn FHIR H HP:0003076 false 2018-09-19T15:46:51 OHSU:JP 2018-11-19T15:19:12 JGM:azhang 0.2 true NA 12177-2 Qn FHIR N HP:0003355 true 2018-09-19T16:16:05 OHSU:JP NA NA 0.1 true NA 12177-2 Qn FHIR H HP:0003355 false 2018-09-19T16:16:05 OHSU:JP NA NA 0.1 true NA @@ -5654,7 +5662,7 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 6301-6 Qn FHIR N HP:0032199 true 2018-10-16T10:57:24 JGM:lccarmody 2019-01-21T09:29:22 JAX:azhang 0.2 true NA 6301-6 Qn FHIR H HP:0008151 false 2018-10-16T10:57:24 JGM:lccarmody 2019-01-21T09:29:22 JAX:azhang 0.2 true NA 6301-6 Qn FHIR L HP:0032198 false 2018-10-16T10:57:24 JGM:lccarmody 2019-01-21T09:29:22 JAX:azhang 0.2 true NA -5792-7 Qn FHIR N HP:0011016 true 2018-10-16T10:58:58 JGM:lccarmody 2018-11-19T15:19:35 JGM:azhang 0.2 true NA +5792-7 Qn FHIR N HP:0003076 true 2018-10-16T10:58:58 JGM:lccarmody 2018-11-19T15:19:35 JGM:azhang 0.2 true NA 5792-7 Qn FHIR H HP:0003076 false 2018-10-16T10:58:58 JGM:lccarmody 2018-11-19T15:19:35 JGM:azhang 0.2 true NA 5804-0 Qn FHIR N HP:0000093 true 2018-10-16T10:59:29 JGM:lccarmody NA NA 0.1 true NA 5804-0 Qn FHIR H HP:0000093 false 2018-10-16T10:59:29 JGM:lccarmody NA NA 0.1 true NA @@ -6307,9 +6315,8 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 29993-3 Ord FHIR NEG HP:0032017 true 2019-01-21T10:23:56 JAX:azhang NA NA 0.1 true NA 30381-8 Qn FHIR N HP:0032017 true 2019-01-21T10:24:19 JAX:azhang NA NA 0.1 true NA 30381-8 Qn FHIR H HP:0032017 false 2019-01-21T10:24:19 JAX:azhang NA NA 0.1 true NA -21582-2 Qn FHIR N HP:0031900 true 2019-01-21T10:37:13 JAX:azhang NA NA 0.1 true NA +21582-2 Qn FHIR N HP:0031901 true 2019-01-21T10:37:13 JAX:azhang NA NA 0.1 true NA 21582-2 Qn FHIR H HP:0031901 false 2019-01-21T10:37:13 JAX:azhang NA NA 0.1 true NA -21582-2 Qn FHIR L HP:0031902 false 2019-01-21T10:37:13 JAX:azhang NA NA 0.1 true NA 4532-8 Qn FHIR N HP:0031904 true 2019-01-21T10:40:48 JAX:azhang NA NA 0.1 true NA 4532-8 Qn FHIR H HP:0031905 false 2019-01-21T10:40:48 JAX:azhang NA NA 0.1 true NA 4532-8 Qn FHIR L HP:0031906 false 2019-01-21T10:40:48 JAX:azhang NA NA 0.1 true NA @@ -6430,7 +6437,8 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 6165-5 Qn FHIR H HP:0410222 false 2019-02-01T19:43:49 UCD:tjcallahan NA NA 0.1 true UCDenver survey results 30934-4 Qn FHIR N HP:0031138 true 2019-02-01T19:44:38 UCD:tjcallahan NA NA 0.1 true UCDenver survey results 30934-4 Qn FHIR H HP:0031185 false 2019-02-01T19:44:38 UCD:tjcallahan NA NA 0.1 true UCDenver survey results -31017-7 Qn FHIR L HP:0010701 false 2019-02-01T19:44:49 UCD:tjcallahan NA NA 0.1 true UCDenver survey results +31017-7 Qn FHIR N HP:0033563 true 2019-02-01T19:44:49 UCD:tjcallahan NA NA 0.1 true UCDenver survey results +31017-7 Qn FHIR H HP:0033563 false 2019-02-01T19:44:49 UCD:tjcallahan NA NA 0.1 true UCDenver survey results 32998-7 Qn FHIR N HP:0010701 true 2019-02-01T19:45:05 UCD:tjcallahan NA NA 0.1 true UCDenver survey results 32998-7 Qn FHIR L HP:0010701 false 2019-02-01T19:45:05 UCD:tjcallahan NA NA 0.1 true UCDenver survey results 11555-0 Qn FHIR N HP:0032281 true 2019-02-11T11:06:16 UCD:tjcallahan 2019-02-22T17:23:07 JGM:azhang 0.2 true UCDenver survey results. Might consider adding a new HPO term to more precisely represent this lab (GitHub issue #4021) @@ -6578,9 +6586,6 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 2082-6 Qn FHIR N HP:0003107 true 2019-02-23T15:23:25 UCD:tjcallahan NA NA 0.1 true NA 2082-6 Qn FHIR H HP:0003124 false 2019-02-23T15:23:25 UCD:tjcallahan NA NA 0.1 true NA 2082-6 Qn FHIR L HP:0003146 false 2019-02-23T15:23:25 UCD:tjcallahan NA NA 0.1 true NA -2118-8 Ord FHIR N HP:0011436 true 2019-02-23T15:23:28 UCD:tjcallahan NA NA 0.1 true NA -2118-8 Ord FHIR H HP:0011433 false 2019-02-23T15:23:28 UCD:tjcallahan NA NA 0.1 true NA -2118-8 Ord FHIR L HP:0011434 false 2019-02-23T15:23:28 UCD:tjcallahan NA NA 0.1 true NA 21219-1 Qn FHIR N HP:0045036 true 2019-02-23T15:23:31 UCD:tjcallahan NA NA 0.1 true NA 21219-1 Qn FHIR H HP:0010839 false 2019-02-23T15:23:31 UCD:tjcallahan NA NA 0.1 true NA 21219-1 Qn FHIR L HP:0045035 false 2019-02-23T15:23:31 UCD:tjcallahan NA NA 0.1 true NA @@ -6637,13 +6642,13 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 26604-9 Qn FHIR H HP:0012556 false 2019-02-23T15:24:29 UCD:tjcallahan NA NA 0.1 true NA 26740-1 Qn FHIR N HP:0003080 true 2019-02-23T15:24:31 UCD:tjcallahan NA NA 0.1 true NA 26740-1 Qn FHIR H HP:0003080 false 2019-02-23T15:24:31 UCD:tjcallahan NA NA 0.1 true NA -26843-3 Ord FHIR N HP:0003131 true 2019-02-23T15:24:33 UCD:tjcallahan NA NA 0.1 true NA -26843-3 Ord FHIR H HP:0003131 false 2019-02-23T15:24:33 UCD:tjcallahan NA NA 0.1 true NA +26843-3 Ord FHIR NEG HP:0003131 true 2019-02-23T15:24:33 UCD:tjcallahan NA NA 0.1 true NA +26843-3 Ord FHIR POS HP:0003131 false 2019-02-23T15:24:33 UCD:tjcallahan NA NA 0.1 true NA 2697-1 Qn FHIR N HP:0031427 true 2019-02-23T15:24:35 UCD:tjcallahan NA NA 0.1 true NA 2697-1 Qn FHIR H HP:0031428 false 2019-02-23T15:24:35 UCD:tjcallahan NA NA 0.1 true NA 2697-1 Qn FHIR L HP:0031429 false 2019-02-23T15:24:35 UCD:tjcallahan NA NA 0.1 true NA -26971-2 Ord FHIR N HP:0003262 true 2019-02-23T15:24:38 UCD:tjcallahan NA NA 0.1 true NA -26971-2 Ord FHIR H HP:0003262 false 2019-02-23T15:24:38 UCD:tjcallahan NA NA 0.1 true NA +26971-2 Ord FHIR NEG HP:0003262 true 2019-02-23T15:24:38 UCD:tjcallahan NA NA 0.1 true NA +26971-2 Ord FHIR POS HP:0003262 false 2019-02-23T15:24:38 UCD:tjcallahan NA NA 0.1 true NA 2701-1 Qn FHIR N HP:0003159 true 2019-02-23T15:24:40 UCD:tjcallahan NA NA 0.1 true NA 2701-1 Qn FHIR H HP:0003159 false 2019-02-23T15:24:40 UCD:tjcallahan NA NA 0.1 true NA 2704-5 Qn FHIR N HP:0500165 true 2019-02-23T15:24:43 UCD:tjcallahan NA NA 0.1 true NA @@ -6727,9 +6732,8 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 30552-4 Qn FHIR N HP:0004340 true 2019-02-23T15:26:05 UCD:tjcallahan NA NA 0.1 true NA 30552-4 Qn FHIR H HP:0004340 false 2019-02-23T15:26:05 UCD:tjcallahan NA NA 0.1 true NA 30552-4 Qn FHIR L HP:0008326 false 2019-02-23T15:26:05 UCD:tjcallahan NA NA 0.1 true NA -3069-2 Ord FHIR N HP:0004365 true 2019-02-23T15:26:08 UCD:tjcallahan NA NA 0.1 true NA -3069-2 Ord FHIR H HP:0500134 false 2019-02-23T15:26:08 UCD:tjcallahan NA NA 0.1 true NA -3069-2 Ord FHIR L HP:0500135 false 2019-02-23T15:26:08 UCD:tjcallahan NA NA 0.1 true NA +3069-2 Ord FHIR NEG HP:0500134 true 2019-02-23T15:26:08 UCD:tjcallahan NA NA 0.1 true NA +3069-2 Ord FHIR POS HP:0500134 false 2019-02-23T15:26:08 UCD:tjcallahan NA NA 0.1 true NA 3079-1 Qn FHIR N HP:0010917 true 2019-02-23T15:26:11 UCD:tjcallahan NA NA 0.1 true NA 3079-1 Qn FHIR H HP:0003231 false 2019-02-23T15:26:11 UCD:tjcallahan NA NA 0.1 true NA 3079-1 Qn FHIR L HP:0500133 false 2019-02-23T15:26:11 UCD:tjcallahan NA NA 0.1 true NA @@ -6754,6 +6758,7 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 33762-6 Qn FHIR N HP:0031138 true 2019-02-23T15:26:37 UCD:tjcallahan NA NA 0.1 true NA 33762-6 Qn FHIR H HP:0031185 false 2019-02-23T15:26:37 UCD:tjcallahan NA NA 0.1 true NA 33898-8 Qn FHIR H HP:0003573 false 2019-02-23T15:26:39 UCD:tjcallahan NA NA 0.1 true NA +33898-8 Qn FHIR N HP:0003573 true 2019-02-23T15:26:39 UCD:tjcallahan NA NA 0.1 true NA 33959-8 Qn FHIR N HP:0032308 true 2019-02-23T15:26:40 UCD:tjcallahan NA NA 0.1 true NA 33959-8 Qn FHIR H HP:0032308 false 2019-02-23T15:26:40 UCD:tjcallahan NA NA 0.1 true NA 34284-0 Qn FHIR N HP:0003163 true 2019-02-23T15:26:42 UCD:tjcallahan NA NA 0.1 true NA @@ -6809,8 +6814,8 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 58778-2 Qn FHIR H HP:0410230 false 2019-02-23T15:27:41 UCD:tjcallahan NA NA 0.1 true NA 58779-0 Qn FHIR N HP:0410230 true 2019-02-23T15:27:43 UCD:tjcallahan NA NA 0.1 true NA 58779-0 Qn FHIR H HP:0410230 false 2019-02-23T15:27:43 UCD:tjcallahan NA NA 0.1 true NA -59069-5 Ord FHIR N HP:0003493 true 2019-02-23T15:27:45 UCD:tjcallahan NA NA 0.1 true NA -59069-5 Ord FHIR H HP:0003493 false 2019-02-23T15:27:45 UCD:tjcallahan NA NA 0.1 true NA +59069-5 Ord FHIR NEG HP:0003493 true 2019-02-23T15:27:45 UCD:tjcallahan NA NA 0.1 true NA +59069-5 Ord FHIR POS HP:0003493 false 2019-02-23T15:27:45 UCD:tjcallahan NA NA 0.1 true NA 59408-5 Qn FHIR N HP:0500165 true 2019-02-23T15:27:47 UCD:tjcallahan NA NA 0.1 true NA 59408-5 Qn FHIR H HP:0012419 false 2019-02-23T15:27:47 UCD:tjcallahan NA NA 0.1 true NA 59408-5 Qn FHIR L HP:0012418 false 2019-02-23T15:27:47 UCD:tjcallahan NA NA 0.1 true NA @@ -6964,13 +6969,13 @@ loincId loincScale system code hpoTermId isNegated createdOn createdBy lastEdite 8455-8 Qn FHIR H HP:0005117 false 2019-02-23T15:30:16 UCD:tjcallahan 2019-02-25T12:18:59 JGM:azhang 0.2 true NA 8455-8 Qn FHIR L HP:0500104 false 2019-02-23T15:30:16 UCD:tjcallahan 2019-02-25T12:18:59 JGM:azhang 0.2 true NA 8459-0 Qn FHIR N HP:0030972 true 2019-02-23T15:30:19 UCD:tjcallahan NA NA 0.1 true NA -8459-0 Qn FHIR H HP:0004956 false 2019-02-23T15:30:19 UCD:tjcallahan NA NA 0.1 true NA +8459-0 Qn FHIR H HP:0004421 false 2019-02-23T15:30:19 UCD:tjcallahan NA NA 0.1 true NA 8459-0 Qn FHIR L HP:0500105 false 2019-02-23T15:30:19 UCD:tjcallahan NA NA 0.1 true NA 8460-8 Qn FHIR N HP:0030972 true 2019-02-23T15:30:22 UCD:tjcallahan NA NA 0.1 true NA -8460-8 Qn FHIR H HP:0004956 false 2019-02-23T15:30:22 UCD:tjcallahan NA NA 0.1 true NA +8460-8 Qn FHIR H HP:0004421 false 2019-02-23T15:30:22 UCD:tjcallahan NA NA 0.1 true NA 8460-8 Qn FHIR L HP:0500105 false 2019-02-23T15:30:22 UCD:tjcallahan NA NA 0.1 true NA 8461-6 Qn FHIR N HP:0030972 true 2019-02-23T15:30:25 UCD:tjcallahan NA NA 0.1 true NA -8461-6 Qn FHIR H HP:0004956 false 2019-02-23T15:30:25 UCD:tjcallahan NA NA 0.1 true NA +8461-6 Qn FHIR H HP:0004421 false 2019-02-23T15:30:25 UCD:tjcallahan NA NA 0.1 true NA 8461-6 Qn FHIR L HP:0500105 false 2019-02-23T15:30:25 UCD:tjcallahan NA NA 0.1 true NA 8867-4 Qn FHIR N HP:0011675 true 2019-02-23T15:30:28 UCD:tjcallahan NA NA 0.1 true NA 8867-4 Qn FHIR H HP:0001649 false 2019-02-23T15:30:28 UCD:tjcallahan NA NA 0.1 true NA diff --git a/convertToV2.py b/convertToV2.py index b11ba34..c22ab2a 100644 --- a/convertToV2.py +++ b/convertToV2.py @@ -51,15 +51,33 @@ def process_comment(comment): -header = ['loincId', 'loincScale', 'outcome', 'hpoTermId', 'supplementalTermId','curated', 'comment'] + +def print_row(row): + id = row['loincId'] + scale = row['loincScale'] + code = row['code'] + hpoTermId = row['hpoTermId'] + isNegated = row['isNegated'] == True + createdOn = row['createdOn'] + createdBy = row['createdBy'] + if isNegated: + neg = "(negated)" + else: + neg = "" + print("{} ({}/{}): {} {}; {}[{}]".format(id, scale, code, hpoTermId, neg, createdBy, createdOn)) + +header = ['loincId', 'loincScale', 'outcome', 'hpoTermId', 'supplementalTermId','curation', 'comment'] fh = open('loinc2hpo-annotations.tsv', 'wt') fh.write("\t".join(header) + "\n") +acceptableScales = {'Qn', 'Ord', 'Nom'} + with open('annotations.tsv') as f: csvreader = csv.DictReader(f, delimiter='\t') for row in csvreader: isFinal = row['isFinalized'] if isFinal != 'true': + print(row) raise ValueError("Line was not finalized") if row['code'] == 'A': @@ -69,6 +87,11 @@ def process_comment(comment): outcome = get_outcome_and_code(row) supplement = '.' comment = process_comment(row['comment']) + scale = row['loincScale'] + if scale not in acceptableScales: + print("Skipping annotation because scale=={}".format(scale)) + print_row(row) + continue fields = [row['loincId'], row['loincScale'], outcome, row['hpoTermId'], supplement, curated, comment] fh.write("\t".join(fields) + "\n") fh.close() diff --git a/loinc2hpo-annotations.tsv b/loinc2hpo-annotations.tsv index 8b8c0fb..b17b1c6 100644 --- a/loinc2hpo-annotations.tsv +++ b/loinc2hpo-annotations.tsv @@ -1,4 +1,4 @@ -loincId loincScale outcome hpoTermId supplementalTermId curated comment +loincId loincScale outcome hpoTermId supplementalTermId curation comment 2823-3 Qn N HP:0011042 . JGM:Aaron[2018-03-20] . 2823-3 Qn H HP:0002153 . JGM:Aaron[2018-03-20] . 2823-3 Qn L HP:0002900 . JGM:Aaron[2018-03-20] . @@ -118,6 +118,7 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 23860-0 Qn H HP:0005518 . HPO:nvasilevsky[2018-04-03] . 23860-0 Qn L HP:0025066 . HPO:nvasilevsky[2018-04-03] . 20454-5 Ord POS HP:0000093 . HPO:nvasilevsky[2018-04-03];JGM:Aaron[2018-04-06] . +20454-5 Ord NEG HP:0000093 . HPO:nvasilevsky[2018-04-03];JGM:Aaron[2018-04-06] . 32167-9 Nom N HP:0012086 . HPO:nvasilevsky[2018-04-03] . 738-5 Ord POS HP:0001972 . JGM:azhang[2018-04-06];JGM:azhang[2018-10-17] . 738-5 Ord NEG HP:0001972 . JGM:azhang[2018-04-06];JGM:azhang[2018-10-17] . @@ -356,6 +357,7 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 2955-3 Qn L HP:0012604 . HPO:nvasilevsky[2018-05-10] . 1839-0 Qn H HP:0001987 . HPO:nvasilevsky[2018-05-10] There is not an Abn ammonia blood level class - should we add that? 1839-0 Qn L HP:0100493 . HPO:nvasilevsky[2018-05-10] There is not an Abn ammonia blood level class - should we add that? +1839-0 Qn N HP:0004364 . HPO:nvasilevsky[2018-05-10] There is not an Abn ammonia blood level class - should we add that? 600-7 Nom N HP:0031864 . HPO:nvasilevsky[2018-05-10] . 600-7 Nom POS HP:0031864 . HPO:nvasilevsky[2018-05-10] . 600-7 Nom H HP:0031864 . HPO:nvasilevsky[2018-05-10] . @@ -1679,11 +1681,6 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 16502-7 Qn N HP:0030794 . HPO:nvasilevsky[2018-05-24] . 16502-7 Qn H HP:0030796 . HPO:nvasilevsky[2018-05-24] . 16502-7 Qn L HP:0030795 . HPO:nvasilevsky[2018-05-24] . -35094-2 Unknown N HP:0030972 . JGM:azhang[2018-06-19] . -35094-2 Unknown POS HP:0000822 . JGM:azhang[2018-06-19] . -35094-2 Unknown H HP:0000822 . JGM:azhang[2018-06-19] . -35094-2 Unknown NEG HP:0030972 . JGM:azhang[2018-06-19] . -35094-2 Unknown L HP:0002615 . JGM:azhang[2018-06-19] . 12552-6 Qn N HP:0410069 . OHSU:JP[2018-06-20] . 12552-6 Qn H HP:0410069 . OHSU:JP[2018-06-20] . 704-7 Qn N HP:0031806 . HPO:probinson[2018-06-28] . @@ -1725,6 +1722,9 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 50205-4 Qn H HP:0003452 . HPO:probinson[2018-06-28] . 50205-4 Qn L HP:0040303 . HPO:probinson[2018-06-28] . 12269-7 Ord POS HP:0031890 . HPO:nvasilevsky[2018-07-17] . +12269-7 Ord NEG HP:0031890 . HPO:nvasilevsky[2018-07-17] . +19161-9 Qn N HP:0032472 . HPO:nvasilevsky[2018-07-17] . +19161-9 Qn L HP:0032473 . HPO:nvasilevsky[2018-07-17] . 19161-9 Qn H HP:0031890 . HPO:nvasilevsky[2018-07-17] . 13658-0 Ord POS HP:0031890 . HPO:nvasilevsky[2018-07-17] . 13658-0 Ord NEG HP:0031890 . HPO:nvasilevsky[2018-07-17] . @@ -2793,8 +2793,11 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 74092-8 Qn N HP:0012072 . OHSU:JP[2018-08-15] . 74092-8 Qn H HP:0012072 . OHSU:JP[2018-08-15] . 10966-0 Ord NEG HP:0003076 . OHSU:JP[2018-08-20] . +10966-0 Ord POS HP:0003076 . OHSU:JP[2018-08-20] . 10967-8 Ord NEG HP:0003076 . OHSU:JP[2018-08-20] . +10967-8 Ord POS HP:0003076 . OHSU:JP[2018-08-20] . 10968-6 Ord NEG HP:0003076 . OHSU:JP[2018-08-20] . +10968-6 Ord POS HP:0003076 . OHSU:JP[2018-08-20] . 12239-0 Ord POS HP:0010471 . OHSU:JP[2018-08-20] . 12239-0 Ord NEG HP:0010471 . OHSU:JP[2018-08-20] . 2520-5 Qn N HP:0030085 . OHSU:JP[2018-08-27] . @@ -2836,9 +2839,9 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 35210-4 Qn N HP:0012335 . HPO:nvasilevsky[2018-08-29] . 35210-4 Qn L HP:0100507 . HPO:nvasilevsky[2018-08-29] . 34637-9 Qn N HP:0012335 . HPO:nvasilevsky[2018-08-29] . -34637-9 Qn L HP:0012336 . HPO:nvasilevsky[2018-08-29] . +34637-9 Qn L HP:0012446 . HPO:nvasilevsky[2018-08-29] . 47547-5 Qn N HP:0012335 . HPO:nvasilevsky[2018-08-29] . -47547-5 Qn L HP:0012336 . HPO:nvasilevsky[2018-08-29] . +47547-5 Qn L HP:0012446 . HPO:nvasilevsky[2018-08-29] . 10364-8 Qn N HP:0500099 . HPO:nvasilevsky[2018-08-29] . 10364-8 Qn H HP:0500099 . HPO:nvasilevsky[2018-08-29] . 12293-7 Ord POS HP:0410171 . HPO:nvasilevsky[2018-08-29] . @@ -2925,7 +2928,7 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 78857-0 Qn H HP:0031841 . HPO:nvasilevsky[2018-09-11] . 35642-8 Ord POS HP:0410171 . HPO:nvasilevsky[2018-09-11] . 35642-8 Ord NEG HP:0410171 . HPO:nvasilevsky[2018-09-11] . -33274-2 Ord POS HP:0012336 . HPO:nvasilevsky[2018-09-11] . +33274-2 Ord POS HP:0012446 . HPO:nvasilevsky[2018-09-11] . 33274-2 Ord NEG HP:0012335 . HPO:nvasilevsky[2018-09-11] . 43717-8 Ord POS HP:0045045 . OHSU:JP[2018-09-12] . 43717-8 Ord NEG HP:0045045 . OHSU:JP[2018-09-12] . @@ -2939,7 +2942,7 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 15013-6 Qn N HP:0004379 . JGM:lccarmody[2018-09-14] . 15013-6 Qn H HP:0010639 . JGM:lccarmody[2018-09-14] . 15013-6 Qn L HP:0010684 . JGM:lccarmody[2018-09-14] . -2350-7 Qn N HP:0011016 . JGM:lccarmody[2018-09-14];JGM:azhang[2018-11-19] . +2350-7 Qn N HP:0003076 . JGM:lccarmody[2018-09-14];JGM:azhang[2018-11-19] . 2350-7 Qn H HP:0003076 . JGM:lccarmody[2018-09-14];JGM:azhang[2018-11-19] . 2956-1 Qn N HP:0012603 . JGM:lccarmody[2018-09-14] . 2956-1 Qn H HP:0012605 . JGM:lccarmody[2018-09-14] . @@ -3197,34 +3200,34 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 13609-3 Qn N HP:0040215 . OHSU:JP[2018-09-19] . 13609-3 Qn H HP:0000842 . OHSU:JP[2018-09-19] . 13609-3 Qn L HP:0040216 . OHSU:JP[2018-09-19] . -1491-0 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +1491-0 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 1491-0 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -1495-1 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +1495-1 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 1495-1 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -1505-7 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +1505-7 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 1505-7 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -15076-3 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +15076-3 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 15076-3 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -15077-1 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +15077-1 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 15077-1 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -1509-9 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +1509-9 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 1509-9 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -1555-2 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +1555-2 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 1555-2 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -18227-9 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +18227-9 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 18227-9 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -21305-8 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +21305-8 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 21305-8 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -21306-6 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +21306-6 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 21306-6 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -21307-4 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +21307-4 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 21307-4 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 21004-7 Nom N HP:0001952 . OHSU:JP[2018-09-19] . 21004-7 Nom NEG HP:0001952 . OHSU:JP[2018-09-19] . 21004-7 Nom L HP:0040270 . OHSU:JP[2018-09-19] . -22705-8 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +22705-8 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 22705-8 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . -2351-5 Qn N HP:0011016 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . +2351-5 Qn N HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 2351-5 Qn H HP:0003076 . OHSU:JP[2018-09-19];JGM:azhang[2018-11-19] . 12177-2 Qn N HP:0003355 . OHSU:JP[2018-09-19] . 12177-2 Qn H HP:0003355 . OHSU:JP[2018-09-19] . @@ -5654,7 +5657,7 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 6301-6 Qn N HP:0032199 . JGM:lccarmody[2018-10-16];JAX:azhang[2019-01-21] . 6301-6 Qn H HP:0008151 . JGM:lccarmody[2018-10-16];JAX:azhang[2019-01-21] . 6301-6 Qn L HP:0032198 . JGM:lccarmody[2018-10-16];JAX:azhang[2019-01-21] . -5792-7 Qn N HP:0011016 . JGM:lccarmody[2018-10-16];JGM:azhang[2018-11-19] . +5792-7 Qn N HP:0003076 . JGM:lccarmody[2018-10-16];JGM:azhang[2018-11-19] . 5792-7 Qn H HP:0003076 . JGM:lccarmody[2018-10-16];JGM:azhang[2018-11-19] . 5804-0 Qn N HP:0000093 . JGM:lccarmody[2018-10-16] . 5804-0 Qn H HP:0000093 . JGM:lccarmody[2018-10-16] . @@ -6153,10 +6156,6 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 52955-2 Qn H HP:0500111 . HPO:nvasilevsky[2018-12-18] . 53736-5 Qn N HP:0031840 . HPO:nvasilevsky[2018-12-18] . 53736-5 Qn H HP:0500111 . HPO:nvasilevsky[2018-12-18] . -53745-6 Unknown N HP:0031840 . HPO:nvasilevsky[2018-12-18] . -53745-6 Unknown POS HP:0500111 . HPO:nvasilevsky[2018-12-18] . -53745-6 Unknown H HP:0500111 . HPO:nvasilevsky[2018-12-18] . -53745-6 Unknown NEG HP:0031840 . HPO:nvasilevsky[2018-12-18] . 70140-9 Qn N HP:0031840 . HPO:nvasilevsky[2018-12-18] . 70140-9 Qn H HP:0500111 . HPO:nvasilevsky[2018-12-18] . 70142-5 Ord POS HP:0500111 . HPO:nvasilevsky[2018-12-18] . @@ -6167,10 +6166,6 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 14308-1 Ord NEG HP:0031840 . HPO:nvasilevsky[2018-12-18] . 14309-9 Ord POS HP:0500112 . HPO:nvasilevsky[2018-12-18] . 14309-9 Ord NEG HP:0031840 . HPO:nvasilevsky[2018-12-18] . -19263-3 Nar N HP:0031840 . HPO:nvasilevsky[2018-12-18] . -19263-3 Nar POS HP:0500112 . HPO:nvasilevsky[2018-12-18] . -19263-3 Nar H HP:0500112 . HPO:nvasilevsky[2018-12-18] . -19263-3 Nar NEG HP:0031840 . HPO:nvasilevsky[2018-12-18] . 20410-7 Qn N HP:0031840 . HPO:nvasilevsky[2018-12-18] . 20410-7 Qn H HP:0500112 . HPO:nvasilevsky[2018-12-18] . 70138-3 Qn N HP:0031840 . HPO:nvasilevsky[2018-12-18] . @@ -6307,9 +6302,8 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 29993-3 Ord NEG HP:0032017 . JAX:azhang[2019-01-21] . 30381-8 Qn N HP:0032017 . JAX:azhang[2019-01-21] . 30381-8 Qn H HP:0032017 . JAX:azhang[2019-01-21] . -21582-2 Qn N HP:0031900 . JAX:azhang[2019-01-21] . +21582-2 Qn N HP:0031901 . JAX:azhang[2019-01-21] . 21582-2 Qn H HP:0031901 . JAX:azhang[2019-01-21] . -21582-2 Qn L HP:0031902 . JAX:azhang[2019-01-21] . 4532-8 Qn N HP:0031904 . JAX:azhang[2019-01-21] . 4532-8 Qn H HP:0031905 . JAX:azhang[2019-01-21] . 4532-8 Qn L HP:0031906 . JAX:azhang[2019-01-21] . @@ -6430,7 +6424,8 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 6165-5 Qn H HP:0410222 . UCD:tjcallahan[2019-02-01] UCDenver survey results 30934-4 Qn N HP:0031138 . UCD:tjcallahan[2019-02-01] UCDenver survey results 30934-4 Qn H HP:0031185 . UCD:tjcallahan[2019-02-01] UCDenver survey results -31017-7 Qn L HP:0010701 . UCD:tjcallahan[2019-02-01] UCDenver survey results +31017-7 Qn N HP:0033563 . UCD:tjcallahan[2019-02-01] UCDenver survey results +31017-7 Qn H HP:0033563 . UCD:tjcallahan[2019-02-01] UCDenver survey results 32998-7 Qn N HP:0010701 . UCD:tjcallahan[2019-02-01] UCDenver survey results 32998-7 Qn L HP:0010701 . UCD:tjcallahan[2019-02-01] UCDenver survey results 11555-0 Qn N HP:0032281 . UCD:tjcallahan[2019-02-11];JGM:azhang[2019-02-22] UCDenver survey results. Might consider adding a new HPO term to more precisely represent this lab (GitHub issue #4021) @@ -6578,9 +6573,6 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 2082-6 Qn N HP:0003107 . UCD:tjcallahan[2019-02-23] . 2082-6 Qn H HP:0003124 . UCD:tjcallahan[2019-02-23] . 2082-6 Qn L HP:0003146 . UCD:tjcallahan[2019-02-23] . -2118-8 Ord N HP:0011436 . UCD:tjcallahan[2019-02-23] . -2118-8 Ord H HP:0011433 . UCD:tjcallahan[2019-02-23] . -2118-8 Ord L HP:0011434 . UCD:tjcallahan[2019-02-23] . 21219-1 Qn N HP:0045036 . UCD:tjcallahan[2019-02-23] . 21219-1 Qn H HP:0010839 . UCD:tjcallahan[2019-02-23] . 21219-1 Qn L HP:0045035 . UCD:tjcallahan[2019-02-23] . @@ -6637,13 +6629,13 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 26604-9 Qn H HP:0012556 . UCD:tjcallahan[2019-02-23] . 26740-1 Qn N HP:0003080 . UCD:tjcallahan[2019-02-23] . 26740-1 Qn H HP:0003080 . UCD:tjcallahan[2019-02-23] . -26843-3 Ord N HP:0003131 . UCD:tjcallahan[2019-02-23] . -26843-3 Ord H HP:0003131 . UCD:tjcallahan[2019-02-23] . +26843-3 Ord NEG HP:0003131 . UCD:tjcallahan[2019-02-23] . +26843-3 Ord POS HP:0003131 . UCD:tjcallahan[2019-02-23] . 2697-1 Qn N HP:0031427 . UCD:tjcallahan[2019-02-23] . 2697-1 Qn H HP:0031428 . UCD:tjcallahan[2019-02-23] . 2697-1 Qn L HP:0031429 . UCD:tjcallahan[2019-02-23] . -26971-2 Ord N HP:0003262 . UCD:tjcallahan[2019-02-23] . -26971-2 Ord H HP:0003262 . UCD:tjcallahan[2019-02-23] . +26971-2 Ord NEG HP:0003262 . UCD:tjcallahan[2019-02-23] . +26971-2 Ord POS HP:0003262 . UCD:tjcallahan[2019-02-23] . 2701-1 Qn N HP:0003159 . UCD:tjcallahan[2019-02-23] . 2701-1 Qn H HP:0003159 . UCD:tjcallahan[2019-02-23] . 2704-5 Qn N HP:0500165 . UCD:tjcallahan[2019-02-23] . @@ -6727,9 +6719,8 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 30552-4 Qn N HP:0004340 . UCD:tjcallahan[2019-02-23] . 30552-4 Qn H HP:0004340 . UCD:tjcallahan[2019-02-23] . 30552-4 Qn L HP:0008326 . UCD:tjcallahan[2019-02-23] . -3069-2 Ord N HP:0004365 . UCD:tjcallahan[2019-02-23] . -3069-2 Ord H HP:0500134 . UCD:tjcallahan[2019-02-23] . -3069-2 Ord L HP:0500135 . UCD:tjcallahan[2019-02-23] . +3069-2 Ord NEG HP:0500134 . UCD:tjcallahan[2019-02-23] . +3069-2 Ord POS HP:0500134 . UCD:tjcallahan[2019-02-23] . 3079-1 Qn N HP:0010917 . UCD:tjcallahan[2019-02-23] . 3079-1 Qn H HP:0003231 . UCD:tjcallahan[2019-02-23] . 3079-1 Qn L HP:0500133 . UCD:tjcallahan[2019-02-23] . @@ -6754,6 +6745,7 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 33762-6 Qn N HP:0031138 . UCD:tjcallahan[2019-02-23] . 33762-6 Qn H HP:0031185 . UCD:tjcallahan[2019-02-23] . 33898-8 Qn H HP:0003573 . UCD:tjcallahan[2019-02-23] . +33898-8 Qn N HP:0003573 . UCD:tjcallahan[2019-02-23] . 33959-8 Qn N HP:0032308 . UCD:tjcallahan[2019-02-23] . 33959-8 Qn H HP:0032308 . UCD:tjcallahan[2019-02-23] . 34284-0 Qn N HP:0003163 . UCD:tjcallahan[2019-02-23] . @@ -6809,8 +6801,8 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 58778-2 Qn H HP:0410230 . UCD:tjcallahan[2019-02-23] . 58779-0 Qn N HP:0410230 . UCD:tjcallahan[2019-02-23] . 58779-0 Qn H HP:0410230 . UCD:tjcallahan[2019-02-23] . -59069-5 Ord N HP:0003493 . UCD:tjcallahan[2019-02-23] . -59069-5 Ord H HP:0003493 . UCD:tjcallahan[2019-02-23] . +59069-5 Ord NEG HP:0003493 . UCD:tjcallahan[2019-02-23] . +59069-5 Ord POS HP:0003493 . UCD:tjcallahan[2019-02-23] . 59408-5 Qn N HP:0500165 . UCD:tjcallahan[2019-02-23] . 59408-5 Qn H HP:0012419 . UCD:tjcallahan[2019-02-23] . 59408-5 Qn L HP:0012418 . UCD:tjcallahan[2019-02-23] . @@ -6964,13 +6956,13 @@ loincId loincScale outcome hpoTermId supplementalTermId curated comment 8455-8 Qn H HP:0005117 . UCD:tjcallahan[2019-02-23];JGM:azhang[2019-02-25] . 8455-8 Qn L HP:0500104 . UCD:tjcallahan[2019-02-23];JGM:azhang[2019-02-25] . 8459-0 Qn N HP:0030972 . UCD:tjcallahan[2019-02-23] . -8459-0 Qn H HP:0004956 . UCD:tjcallahan[2019-02-23] . +8459-0 Qn H HP:0004421 . UCD:tjcallahan[2019-02-23] . 8459-0 Qn L HP:0500105 . UCD:tjcallahan[2019-02-23] . 8460-8 Qn N HP:0030972 . UCD:tjcallahan[2019-02-23] . -8460-8 Qn H HP:0004956 . UCD:tjcallahan[2019-02-23] . +8460-8 Qn H HP:0004421 . UCD:tjcallahan[2019-02-23] . 8460-8 Qn L HP:0500105 . UCD:tjcallahan[2019-02-23] . 8461-6 Qn N HP:0030972 . UCD:tjcallahan[2019-02-23] . -8461-6 Qn H HP:0004956 . UCD:tjcallahan[2019-02-23] . +8461-6 Qn H HP:0004421 . UCD:tjcallahan[2019-02-23] . 8461-6 Qn L HP:0500105 . UCD:tjcallahan[2019-02-23] . 8867-4 Qn N HP:0011675 . UCD:tjcallahan[2019-02-23] . 8867-4 Qn H HP:0001649 . UCD:tjcallahan[2019-02-23] .