From 7abbc2ea335677e356d39c6873c9f0004b381c5e Mon Sep 17 00:00:00 2001 From: Astrid Deschenes Date: Tue, 16 Apr 2024 21:13:23 -0400 Subject: [PATCH] Update vignette --- vignettes/enrichViewNet.Rmd | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/vignettes/enrichViewNet.Rmd b/vignettes/enrichViewNet.Rmd index b1685ff..f9eb656 100644 --- a/vignettes/enrichViewNet.Rmd +++ b/vignettes/enrichViewNet.Rmd @@ -666,8 +666,7 @@ The first step has been presented in the previous section. An enrichment map can show enrichment results from multiple enrichment analyses. A different color is used for each analysis. This enables to -highlight the enriched terms shared by multiples analyses as well as -analysis specific network of terms. +highlight the similarities and differences between the analyses. ```{r emapMulti01, echo=TRUE, warning=FALSE, message=FALSE, collapse=F, eval=TRUE, fig.cap="An enrichment map containing Kegg enrichment results for 2 different experiments.", fig.align="center"} @@ -740,7 +739,7 @@ The output of the _createEnrichMapMultiBasic()_ function is a _ggplot_ object. This means that the graph can be personalized. For example, the default colors, legend title and legend font can be changed: -```{r emapMultiCustom, echo=TRUE, warning=FALSE, message=FALSE, collapse=F, eval=TRUE, fig.cap="An enrichment map using KEGG terms from 2 enrichment analyses with personalized colors."} +```{r emapMultiCustom, echo=TRUE, warning=FALSE, message=FALSE, collapse=F, eval=TRUE, fig.cap="An enrichment map using KEGG terms from 2 enrichment analyses with personalized colors and legend."} ## Required library library(ggplot2)