From 2768d2ac9b36fa1d1a4472b1befa7fdc8d561919 Mon Sep 17 00:00:00 2001 From: Clemens Messerschmidt Date: Fri, 1 Feb 2019 12:59:28 +0100 Subject: [PATCH] Fix CI. --- digestiflow_demux/tests/test_bases_mask.py | 2 +- digestiflow_demux/wrappers/bcl2fastq2/wrapper.py | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/digestiflow_demux/tests/test_bases_mask.py b/digestiflow_demux/tests/test_bases_mask.py index b846308..16a47dc 100644 --- a/digestiflow_demux/tests/test_bases_mask.py +++ b/digestiflow_demux/tests/test_bases_mask.py @@ -4,7 +4,7 @@ split_bases_mask, compare_bases_mask, return_bases_mask, - BaseMaskConfigException + BaseMaskConfigException, ) diff --git a/digestiflow_demux/wrappers/bcl2fastq2/wrapper.py b/digestiflow_demux/wrappers/bcl2fastq2/wrapper.py index dd37718..751fd09 100644 --- a/digestiflow_demux/wrappers/bcl2fastq2/wrapper.py +++ b/digestiflow_demux/wrappers/bcl2fastq2/wrapper.py @@ -17,8 +17,8 @@ # More than 8 threads will not work for bcl2fastq. bcl2fastq_threads = min(8, snakemake.config["cores"]) # noqa -if snakemake.params.read_structure: - bases_mask = "--use-bases-mask " + snakemake.params.read_structure +if snakemake.params.read_structure: # noqa + bases_mask = "--use-bases-mask " + snakemake.params.read_structure # noqa else: bases_mask = ""