diff --git a/config/api_list.yaml b/config/api_list.yaml index bbd8a53..b301ce4 100644 --- a/config/api_list.yaml +++ b/config/api_list.yaml @@ -102,36 +102,9 @@ include: name: Text Mining Targeted Association API # TRAPI (Translator standard) APIs: Automat # not accessible by team or api-specific endpoints - # Notes: We don't ingest the following: - # - Automat-robokop: seems to repeat a lot of data that is in the other APIs - - id: f82c01b15c46e024212c1a3271aaef0b - name: Automat-ctd(Trapi v1.5.0) - - id: 673b9fc76973dfa5fe3ed151fdbfc807 - name: Automat-drug-central(Trapi v1.5.0) - - id: eef72049e4e01c020b7799f711e0e65b - name: Automat-gtex(Trapi v1.5.0) - - id: 759df287a21c30cd514df323be02a84b - name: Automat-gtopdb(Trapi v1.5.0) - - id: 349fed5531c094c33f10c071efe9d0de - name: Automat-gwas-catalog(Trapi v1.5.0) - - id: a5fe24f987331b58191e67598118f369 - name: Automat-hetionet(Trapi v1.5.0) - - id: 8671309d2b94e413a4c1f9a9f82e4660 - name: Automat-hgnc(Trapi v1.5.0) - - id: 0a1c0f46f4950b82b1aa7dad27aad10a - name: Automat-hmdb(Trapi v1.5.0) - - id: cb7a43d444cb3dcbe8e3c78d314334cf - name: Automat-human-goa(Trapi v1.5.0) - - id: c64d583402f21cc85810d33befe49c86 - name: Automat-icees-kg(Trapi v1.5.0) - - id: b4023595664163e0aec5e825da150e16 - name: Automat-intact(Trapi v1.5.0) - - id: 3f78d3fb8a7a577fbc7cc0a913ac3fc5 - name: Automat-panther(Trapi v1.5.0) - - id: 1f057c53d42694686369f0e542f965c6 - name: Automat-pharos(Trapi v1.5.0) - - id: 2aca41fc6c3dc426ec6583d42603be02 - name: Automat-viral-proteome(Trapi v1.5.0) + # using robokop to access all automat resources at once + - id: 4f9c8853b721ef1f14ecee6d92fc19b5 + name: Automat-robokop(Trapi v1.5.0) # TRAPI (Translator standard) APIs: COHD # not accessible by team or api-specific endpoints # notes on COHD: @@ -145,8 +118,22 @@ include: # not accessible by team or api-specific endpoints - id: 412af63e15b73e5a30778aac84ce313f name: Connections Hypothesis Provider API - # # TRAPI (Translator standard) APIs: Multiomics (made with RTX team Plover) - # # not accessible by team or api-specific endpoints - # - id: e51073371d7049b9643e1edbdd61bcbd - # name: Clinical Trials KP - TRAPI 1.5.0 + # TRAPI (Translator standard) APIs: Molecular Data Provider + # not accessible by team or api-specific endpoints + - id: 1901bab8d33bb70b124f400ec1cfdba3 + name: MolePro + # TRAPI (Translator standard) APIs: Multiomics (made with RTX team Plover) + # not accessible by team or api-specific endpoints + - id: e51073371d7049b9643e1edbdd61bcbd + name: Clinical Trials KP - TRAPI 1.5.0 + includeFlipped: true + - id: edc04feaf16c12424737988ce2e90d60 + name: Drug Approvals KP - TRAPI 1.5.0 + includeFlipped: true + - id: a8be4ea3fe8fa80a952ead0b3c5e4bc1 + name: Microbiome KP - TRAPI 1.5.0 + includeFlipped: true + - id: 1b6de23ed3c4e0713b20794477ba1e39 + name: Multiomics KP - TRAPI 1.5.0 + includeFlipped: true exclude: [] # if adding exclude remove these square brackets diff --git a/config/smartapi_overrides.yaml b/config/smartapi_overrides.yaml index bf7bf47..3ac7e57 100644 --- a/config/smartapi_overrides.yaml +++ b/config/smartapi_overrides.yaml @@ -2,6 +2,6 @@ config: only_overrides: false apis: { - # "8f08d1446e0bb9c2b323713ce83e2bd3": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/refs/heads/remove-clinical-trials/mychem.info/openapi_full.yml", - # "1138c3297e8e403b6ac10cff5609b319": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/refs/heads/remove-clinical-trials/repodb/smartapi.yaml" + "8f08d1446e0bb9c2b323713ce83e2bd3": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/refs/heads/remove-clinical-trials/mychem.info/openapi_full.yml", + "1138c3297e8e403b6ac10cff5609b319": "https://raw.githubusercontent.com/NCATS-Tangerine/translator-api-registry/refs/heads/remove-clinical-trials/repodb/smartapi.yaml" }