diff --git a/README.md b/README.md index 8b64979..6c1cd29 100644 --- a/README.md +++ b/README.md @@ -55,6 +55,16 @@ If cell types are available, users can incorporate the information as follows >>> ... >>> Pa = Pamona.Pamona(..., M=DM, ...) ``` +## Examples on simualtions and real data sets (jupyter notebook) ++ [Integration of Simulation 1 in Pamona paper](https://github.com/caokai1073/Pamona/blob/master/example/Simulation1.ipynb) + ++ [Integration of Simulation 2 in Pamona paper](https://github.com/caokai1073/Pamona/blob/master/example/Simulation2.ipynb) + ++ [Integration of scGEM data](https://github.com/caokai1073/Pamona/blob/master/example/scGEM.ipynb) + ++ [Integration of three datasets of scNMT data](https://github.com/caokai1073/Pamona/blob/master/example/scNMT-three-datasets.ipynb) + ++ [Integration of PBMC data with cell types as prior information](https://github.com/caokai1073/Pamona/blob/master/example/PBMC.ipynb) ## Parameters of ```class Pamona```