gui.m

function varargout = spindleGUI(varargin)

% GUI M-file for gui.fig
%      GUI, by itself, creates a new GUI or raises the existing
%      singleton*.
%
%      H = GUI returns the handle to a new GUI or the handle to
%      the existing singleton*.
%
%      GUI('CALLBACK',hObject,eventData,handles,...) calls the local
%      function named CALLBACK in GUI.M with the given input arguments.
%
%      GUI('Property','Value',...) creates a new GUI or raises the
%      existing singleton*.  Starting from the left, property value pairs are
%      applied to the GUI before gui_OpeningFcn gets called.  An
%      unrecognized property name or invalid value makes property application
%      stop.  All inputs are passed to gui_OpeningFcn via varargin.
%
%      *See GUI Options on GUIDE's Tools menu.  Choose "GUI allows only one
%      instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES

% Edit the above text to modify the response to help gui

% Last Modified by GUIDE v2.5 12-Feb-2013 14:54:02

% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name',       mfilename, ...
                   'gui_Singleton',  gui_Singleton, ...
                   'gui_OpeningFcn', @spindleGUI_OpeningFcn, ...
                   'gui_OutputFcn',  @spindleGUI_OutputFcn, ...
                   'gui_LayoutFcn',  [] , ...
                   'gui_Callback',   []);
if nargin && ischar(varargin{1})
    gui_State.gui_Callback = str2func(varargin{1});
end

if nargout
    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
    gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT


% --- Executes just before gui is made visible.
function spindleGUI_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject    handle to figure
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
% varargin   command line arguments to gui (see VARARGIN)

% Choose default command line output for gui
handles.output = hObject;

% Update handles structure
guidata(hObject, handles);

% UIWAIT makes gui wait for user response (see UIRESUME)
% uiwait(handles.figure1);


% --- Outputs from this function are returned to the command line.
function varargout = spindleGUI_OutputFcn(hObject, eventdata, handles) 
% varargout  cell array for returning output args (see VARARGOUT);
% hObject    handle to figure
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Get default command line output from handles structure
varargout{1} = handles.output;



function edit1_Callback(hObject, eventdata, handles)
% hObject    handle to edit1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit1 as text
%        str2double(get(hObject,'String')) returns contents of edit1 as a double


% --- Executes during object creation, after setting all properties.
function edit1_CreateFcn(hObject, eventdata, handles)
% hObject    handle to edit1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end



function edit2_Callback(hObject, eventdata, handles)
% hObject    handle to edit2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit2 as text
%        str2double(get(hObject,'String')) returns contents of edit2 as a double


% --- Executes during object creation, after setting all properties.
function edit2_CreateFcn(hObject, eventdata, handles)
% hObject    handle to edit2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end



function edit3_Callback(hObject, eventdata, handles)
% hObject    handle to edit3 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit3 as text
%        str2double(get(hObject,'String')) returns contents of edit3 as a double


% --- Executes during object creation, after setting all properties.
function edit3_CreateFcn(hObject, eventdata, handles)
% hObject    handle to edit3 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


% --- Executes on button press in showDisksCheckbox.
function showDisksCheckbox_Callback(hObject, eventdata, handles)
% hObject    handle to showDisksCheckbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
showDisks = get(hObject,'Value');
% Hint: get(hObject,'Value') returns toggle state of showDisksCheckbox


% --- Executes on button press in showCylindersCheckbox.
function showCylindersCheckbox_Callback(hObject, eventdata, handles)
% hObject    handle to showCylindersCheckbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
showCylinders = get(hObject,'Value');
% Hint: get(hObject,'Value') returns toggle state of showCylindersCheckbox


% --- Executes on button press in showSpheresCheckbox.
function showSpheresCheckbox_Callback(hObject, eventdata, handles)
% hObject    handle to showSpheresCheckbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
showSpheres = get(hObject,'Value');
% Hint: get(hObject,'Value') returns toggle state of showSpheresCheckbox


% --- Executes on button press in generateSimulationButton.
function generateSimulationButton_Callback(hObject, eventdata, handles)

s = struct('name','ModelSettings');

s.showDisksText = 'false';
if get(handles.showDisksCheckbox,'Value') == 1
    s.showDisksText = 'true';
end

s.showCylindersText = 'false';
if get(handles.showCylindersCheckbox,'Value') == 1
	s.showCylindersText = 'true';
end

s.showSpheresText = 'false';
if get(handles.showSpheresCheckbox,'Value') == 1
    s.showSpheresText = 'true';
end

% Map menu item numbers to fluorescence channel names
colorvec = {'red','green','blue','all'};
s.diskFC     = colorvec{ get(handles.diskColorMenu,'Value') };
s.cylinderFC = colorvec{ get(handles.cylinderColorMenu,'Value') };
s.sphereFC   = colorvec{ get(handles.sphereColorMenu,'Value') };

s.kmtRadius1 = str2double(get(handles.kmtRadiusEdit1,'String'));
s.kmtUncertaintySphereRadius1 = str2double(get(handles.kmtUncertaintySphereRadiusEdit1,'String'));
s.kmtShow2 = get(handles.showKmt2Checkbox,'Value') == 1;  
s.kmtRadius2 = str2double(get(handles.kmtRadiusEdit2,'String'));
s.kmtUncertaintySphereRadius2 = str2double(get(handles.kmtUncertaintySphereRadiusEdit2,'String'));
s.kmtShow3 = get(handles.showKmt3Checkbox,'Value') == 1;
s.kmtRadius3 = str2double(get(handles.kmtRadiusEdit3,'String'));
s.kmtUncertaintySphereRadius3 = str2double(get(handles.kmtUncertaintySphereRadiusEdit3,'String'));


spindleSimDriver( s );
guidata(hObject,handles)
% hObject    handle to generateSimulationButton (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)


% --- Executes on selection change in diskColorMenu.
function diskColorMenu_Callback(hObject, eventdata, handles)
% hObject    handle to diskColorMenu (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
contents = cellstr(get(hObject,'String'));
diskFC = contents{get(hObject,'Value')};
% Hints: contents = cellstr(get(hObject,'String')) returns diskColorMenu contents as cell array
%        contents{get(hObject,'Value')} returns selected item from diskColorMenu


% --- Executes during object creation, after setting all properties.
function diskColorMenu_CreateFcn(hObject, eventdata, handles)
% hObject    handle to diskColorMenu (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: popupmenu controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


% --- Executes on selection change in cylinderColorMenu.
function cylinderColorMenu_Callback(hObject, eventdata, handles)
% hObject    handle to cylinderColorMenu (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
contents = cellstr(get(hObject,'String'));
cylinderFC = contents{get(hObject,'Value')};
% Hints: contents = cellstr(get(hObject,'String')) returns cylinderColorMenu contents as cell array
%        contents{get(hObject,'Value')} returns selected item from cylinderColorMenu


% --- Executes during object creation, after setting all properties.
function cylinderColorMenu_CreateFcn(hObject, eventdata, handles)
% hObject    handle to cylinderColorMenu (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: popupmenu controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


% --- Executes on selection change in sphereColorMenu.
function sphereColorMenu_Callback(hObject, eventdata, handles)
% hObject    handle to sphereColorMenu (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
contents = cellstr(get(hObject,'String'));
sphereFC = contents{get(hObject,'Value')};
% Hints: contents = cellstr(get(hObject,'String')) returns sphereColorMenu contents as cell array
%        contents{get(hObject,'Value')} returns selected item from sphereColorMenu


% --- Executes during object creation, after setting all properties.
function sphereColorMenu_CreateFcn(hObject, eventdata, handles)
% hObject    handle to sphereColorMenu (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: popupmenu controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end



function kmtRadiusEdit1_Callback(hObject, eventdata, handles)
% hObject    handle to kmtRadiusEdit1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of kmtRadiusEdit1 as text
%        str2double(get(hObject,'String')) returns contents of kmtRadiusEdit1 as a double
kmtRadius = str2double(get(hObject,'String'));

% --- Executes during object creation, after setting all properties.
function kmtRadiusEdit1_CreateFcn(hObject, eventdata, handles)
% hObject    handle to kmtRadiusEdit1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end



function kmtUncertaintySphereRadiusEdit1_Callback(hObject, eventdata, handles)
% hObject    handle to kmtUncertaintySphereRadiusEdit1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of kmtUncertaintySphereRadiusEdit1 as text
%        str2double(get(hObject,'String')) returns contents of kmtUncertaintySphereRadiusEdit1 as a double


% --- Executes during object creation, after setting all properties.
function kmtUncertaintySphereRadiusEdit1_CreateFcn(hObject, eventdata, handles)
% hObject    handle to kmtUncertaintySphereRadiusEdit1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end



function kmtRadiusEdit2_Callback(hObject, eventdata, handles)
% hObject    handle to kmtRadiusEdit2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of kmtRadiusEdit2 as text
%        str2double(get(hObject,'String')) returns contents of kmtRadiusEdit2 as a double


% --- Executes during object creation, after setting all properties.
function kmtRadiusEdit2_CreateFcn(hObject, eventdata, handles)
% hObject    handle to kmtRadiusEdit2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end



function kmtRadiusEdit3_Callback(hObject, eventdata, handles)
% hObject    handle to kmtRadiusEdit3 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of kmtRadiusEdit3 as text
%        str2double(get(hObject,'String')) returns contents of kmtRadiusEdit3 as a double


% --- Executes during object creation, after setting all properties.
function kmtRadiusEdit3_CreateFcn(hObject, eventdata, handles)
% hObject    handle to kmtRadiusEdit3 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end



function kmtUncertaintySphereRadiusEdit2_Callback(hObject, eventdata, handles)
% hObject    handle to kmtUncertaintySphereRadiusEdit2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of kmtUncertaintySphereRadiusEdit2 as text
%        str2double(get(hObject,'String')) returns contents of kmtUncertaintySphereRadiusEdit2 as a double


% --- Executes during object creation, after setting all properties.
function kmtUncertaintySphereRadiusEdit2_CreateFcn(hObject, eventdata, handles)
% hObject    handle to kmtUncertaintySphereRadiusEdit2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end



function kmtUncertaintySphereRadiusEdit3_Callback(hObject, eventdata, handles)
% hObject    handle to kmtUncertaintySphereRadiusEdit3 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of kmtUncertaintySphereRadiusEdit3 as text
%        str2double(get(hObject,'String')) returns contents of kmtUncertaintySphereRadiusEdit3 as a double


% --- Executes during object creation, after setting all properties.
function kmtUncertaintySphereRadiusEdit3_CreateFcn(hObject, eventdata, handles)
% hObject    handle to kmtUncertaintySphereRadiusEdit3 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


% --- Executes on button press in showKmt2Checkbox.
function showKmt2Checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to showKmt2Checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of showKmt2Checkbox


% --- Executes on button press in showKmt3Checkbox.
function showKmt3Checkbox_Callback(hObject, eventdata, handles)
% hObject    handle to showKmt3Checkbox (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of showKmt3Checkbox