diff --git a/Dockerfile b/Dockerfile index 76d12dce6..eed648e54 100644 --- a/Dockerfile +++ b/Dockerfile @@ -13,8 +13,8 @@ RUN poetry config virtualenvs.create false RUN poetry config virtualenvs.in-project false COPY pyproject.toml ./ -COPY poetry.lock ./ +RUN poetry lock RUN poetry install WORKDIR /app diff --git a/Dockerfile.celery b/Dockerfile.celery deleted file mode 100644 index f9fee6f41..000000000 --- a/Dockerfile.celery +++ /dev/null @@ -1,5 +0,0 @@ -FROM python:3.6 -ENV PYTHONUNBUFFERED 1 -ENV C_FORCE_ROOT True -ADD requirements.txt . -RUN pip install -r requirements.txt diff --git a/Dockerfile.flower b/Dockerfile.flower index b7722e5e7..59e84d6ed 100644 --- a/Dockerfile.flower +++ b/Dockerfile.flower @@ -1,8 +1,12 @@ -FROM python:3.9-alpine +FROM python:3.9 + +# PYTHONUNBUFFERED: Force stdin, stdout and stderr to be totally unbuffered. (equivalent to `python -u`) +# PYTHONHASHSEED: Enable hash randomization (equivalent to `python -R`) +# PYTHONDONTWRITEBYTECODE: Do not write byte files to disk, since we maintain it as readonly. (equivalent to `python -B`) +ENV PYTHONUNBUFFERED=1 PYTHONHASHSEED=random PYTHONDONTWRITEBYTECODE=1 # Get latest root certificates -RUN apk add --no-cache ca-certificates && update-ca-certificates curl -RUN apk add curl +RUN apt-get update && apt-get install -y ca-certificates && update-ca-certificates # # Install the required packages RUN curl -sSL https://install.python-poetry.org | python3 - @@ -18,13 +22,6 @@ RUN poetry add redis=3.0.1 RUN poetry add flower=0.9.3 RUN poetry add celery="<5.0.0" -# PYTHONUNBUFFERED: Force stdin, stdout and stderr to be totally unbuffered. (equivalent to `python -u`) -# PYTHONHASHSEED: Enable hash randomization (equivalent to `python -R`) -# PYTHONDONTWRITEBYTECODE: Do not write byte files to disk, since we maintain it as readonly. 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-[package.extras] -docs = ["Sphinx", "repoze.sphinx.autointerface", "sphinx-rtd-theme"] -test = ["coverage (>=5.0.3)", "zope.event", "zope.testing"] -testing = ["coverage (>=5.0.3)", "zope.event", "zope.testing"] - -[metadata] -lock-version = "2.0" -python-versions = "^3.10" -content-hash = "dcf5a88020b86cffb38b905e24f9c2c3b0e92a3dc12ced64a15ded2dab5792ff" diff --git a/pyproject.toml b/pyproject.toml index cb3e59cd0..39538b909 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ readme = "README.md" package-mode = false [tool.poetry.dependencies] -python = "^3.10" +python = "3.9.19" django = "2.2.17" django-oauth-toolkit = "1.0.0" django-cors-middleware = "1.5.0" @@ -27,7 +27,7 @@ pyyaml = "5.3.1" watchdog = "2.1.1" argh = "0.26.2" python-dateutil = "2.7.3" -bpython = "0.17.1" +bpython = "^0.21.0" websockets = "8.1" aiofiles = "0.4.0" oyaml = "0.7" diff --git a/src/apps/analytics/tasks.py b/src/apps/analytics/tasks.py index 776baf05f..5d822e774 100644 --- a/src/apps/analytics/tasks.py +++ b/src/apps/analytics/tasks.py @@ -31,7 +31,7 @@ logger = logging.getLogger() -@app.task(queue="site-worker", soft_time_limit=60 * 60 * 12) # 12 hours +@app.task(queue="site-worker", soft_time_limit=60 * 60 * 24) # 24 hours def create_storage_analytics_snapshot(): # Timer started ! logger.info("Task create_storage_analytics_snapshot started") diff --git a/src/apps/api/serializers/datasets.py b/src/apps/api/serializers/datasets.py index 7543afe54..127f97478 100644 --- a/src/apps/api/serializers/datasets.py +++ b/src/apps/api/serializers/datasets.py @@ -3,6 +3,7 @@ from api.mixins import DefaultUserCreateMixin from datasets.models import Data, DataGroup +from competitions.models import CompetitionCreationTaskStatus, CompetitionDump class DataSerializer(DefaultUserCreateMixin, serializers.ModelSerializer): @@ -101,13 +102,32 @@ class Meta: ) def get_competition(self, obj): - - # return competition dict with id and title if available if obj.competition: + # Submission return { "id": obj.competition.id, "title": obj.competition.title, } + else: + competition = None + try: + # Check if it is a bundle + competition = CompetitionCreationTaskStatus.objects.get(dataset=obj).resulting_competition + except CompetitionCreationTaskStatus.DoesNotExist: + competition = None + if not competition: + # Check if it is a dump + try: + competition = CompetitionDump.objects.get(dataset=obj).competition + except CompetitionDump.DoesNotExist: + competition = None + + if competition: + return { + "id": competition.id, + "title": competition.title + } + return None def get_owner_display_name(self, instance): diff --git a/src/apps/api/serializers/tasks.py b/src/apps/api/serializers/tasks.py index 62080890d..acd07a8c4 100644 --- a/src/apps/api/serializers/tasks.py +++ b/src/apps/api/serializers/tasks.py @@ -207,14 +207,28 @@ def get_solutions(self, instance): return SolutionSerializer(qs, many=True).data def get_public_datasets(self, instance): + input_data = instance.task.input_data reference_data = instance.task.reference_data ingestion_program = instance.task.ingestion_program scoring_program = instance.task.scoring_program + + # Some tasks may not have input data, reference data and ingestion program + # Checking all the datasets and programs and adding them to dataset_list_ids + dataset_list_ids = [] + if input_data: + dataset_list_ids.append(input_data.id) + if reference_data: + dataset_list_ids.append(reference_data.id) + if ingestion_program: + dataset_list_ids.append(ingestion_program.id) + if scoring_program: + dataset_list_ids.append(scoring_program.id) + + # Serializing the datasets try: - dataset_list_ids = [input_data.id, reference_data.id, ingestion_program.id, scoring_program.id] qs = Data.objects.filter(id__in=dataset_list_ids) return DataDetailSerializer(qs, many=True).data - except AttributeError: - print("This phase task has no datasets") - return None + except Exception: + # No datasets or programs to return + return [] diff --git a/src/apps/api/tests/test_submissions.py b/src/apps/api/tests/test_submissions.py index e91a64ecb..2ad0553a2 100644 --- a/src/apps/api/tests/test_submissions.py +++ b/src/apps/api/tests/test_submissions.py @@ -26,9 +26,17 @@ def setUp(self): # Extra dummy user to test permissions, they shouldn't have access to many things self.other_user = UserFactory(username='other_user', password='other') - # Make a participant and submission into competition - self.participant = UserFactory(username='participant', password='other') - CompetitionParticipantFactory(user=self.participant, competition=self.comp) + # Make participants + self.participant = UserFactory(username='participant_approved', password='other') + self.pending_participant = UserFactory(username='participant_pending', password='other') + self.denied_participant = UserFactory(username='participant_denied', password='other') + + # Add user as participants in a competition with different statuses + CompetitionParticipantFactory(user=self.participant, competition=self.comp, status=CompetitionParticipant.APPROVED) + CompetitionParticipantFactory(user=self.pending_participant, competition=self.comp, status=CompetitionParticipant.PENDING) + CompetitionParticipantFactory(user=self.denied_participant, competition=self.comp, status=CompetitionParticipant.DENIED) + + # add submission with owner = approved participant self.existing_submission = SubmissionFactory( phase=self.phase, owner=self.participant, @@ -232,11 +240,21 @@ def test_who_can_see_detailed_result_when_visualization_is_true(self): resp = self.client.get(url) assert resp.status_code == 200 - # Actual user can see their submission detail result + # approved user can see submission detail result self.client.force_login(self.participant) resp = self.client.get(url) assert resp.status_code == 200 + # pending user cannot see submission detail result + self.client.force_login(self.pending_participant) + resp = self.client.get(url) + assert resp.status_code == 403 + + # denied user cannot see submission detail result + self.client.force_login(self.denied_participant) + resp = self.client.get(url) + assert resp.status_code == 403 + # Regular user cannot see submission detail result self.client.force_login(self.other_user) resp = self.client.get(url) diff --git a/src/apps/api/views/competitions.py b/src/apps/api/views/competitions.py index 11f5f4aad..2ce5f409f 100644 --- a/src/apps/api/views/competitions.py +++ b/src/apps/api/views/competitions.py @@ -220,7 +220,7 @@ def create(self, request, *args, **kwargs): data = request.data if 'leaderboards' in data: leaderboard_data = data['leaderboards'][0] - if(leaderboard_data['id']): + if leaderboard_data['id']: leaderboard_instance = Leaderboard.objects.get(id=leaderboard_data['id']) leaderboard = LeaderboardSerializer(leaderboard_instance, data=data['leaderboards'][0]) else: @@ -538,7 +538,7 @@ def public(self, request): qs = Competition.objects.filter(published=True) qs = qs.order_by('-id') queryset = self.filter_queryset(qs) - + queryset = queryset.annotate(participant_count=Count(F('participants'), distinct=True)) page = self.paginate_queryset(queryset) if page is not None: serializer = self.get_serializer(page, many=True) diff --git a/src/apps/api/views/datasets.py b/src/apps/api/views/datasets.py index 2175b9dc0..1c2d10a10 100644 --- a/src/apps/api/views/datasets.py +++ b/src/apps/api/views/datasets.py @@ -40,6 +40,9 @@ def get_queryset(self): # _type = dataset if called from datasets and programs tab to filter datasets and programs is_dataset = self.request.query_params.get('_type', '') == 'dataset' + # _type = dataset if called from datasets and programs tab to filter datasets and programs + is_bundle = self.request.query_params.get('_type', '') == 'bundle' + # get queryset qs = self.queryset @@ -50,6 +53,11 @@ def get_queryset(self): # filter datasets and programs if is_dataset: qs = qs.filter(~Q(type=Data.SUBMISSION)) + qs = qs.exclude(Q(type=Data.COMPETITION_BUNDLE)) + + # filter bundles + if is_bundle: + qs = qs.filter(Q(type=Data.COMPETITION_BUNDLE)) # public filter check if is_public: @@ -58,7 +66,7 @@ def get_queryset(self): qs = qs.filter(Q(created_by=self.request.user)) # if GET is called but provided no filters, fall back to default behaviour - if (not is_submission) and (not is_dataset) and (not is_public): + if (not is_submission) and (not is_dataset) and (not is_bundle) and (not is_public): qs = self.queryset qs = qs.filter(Q(is_public=True) | Q(created_by=self.request.user)) @@ -66,7 +74,7 @@ def get_queryset(self): qs = self.queryset qs = qs.filter(Q(is_public=True) | Q(created_by=self.request.user)) - qs = qs.exclude(Q(type=Data.COMPETITION_BUNDLE) | Q(name__isnull=True)) + qs = qs.exclude(Q(name__isnull=True)) qs = qs.select_related('created_by').order_by('-created_when') diff --git a/src/apps/api/views/leaderboards.py b/src/apps/api/views/leaderboards.py index 2b7ed2524..87753a3b4 100644 --- a/src/apps/api/views/leaderboards.py +++ b/src/apps/api/views/leaderboards.py @@ -1,7 +1,7 @@ -from rest_framework.permissions import IsAuthenticated from rest_framework.viewsets import ModelViewSet from rest_framework.response import Response -from api.permissions import LeaderboardNotHidden, LeaderboardIsOrganizerOrCollaborator +from rest_framework.status import HTTP_405_METHOD_NOT_ALLOWED +from api.permissions import LeaderboardNotHidden from api.serializers.leaderboards import LeaderboardEntriesSerializer from api.serializers.submissions import SubmissionScoreSerializer from leaderboards.models import Leaderboard, SubmissionScore @@ -10,24 +10,32 @@ class LeaderboardViewSet(ModelViewSet): queryset = Leaderboard.objects.all() serializer_class = LeaderboardEntriesSerializer + http_method_names = ['get'] # Only allow GET requests - # TODO: The retrieve and list actions are the only ones used, apparently. Delete other permission checks soon! - def get_permissions(self): - if self.action in ['update', 'partial_update', 'destroy']: - raise Exception('Unexpected code branch execution.') - self.permission_classes = [LeaderboardIsOrganizerOrCollaborator] - elif self.action in ['create']: - raise Exception('Unexpected code branch execution.') - self.permission_classes = [IsAuthenticated] - elif self.action in ['retrieve', 'list']: - self.permission_classes = [LeaderboardNotHidden] + def create(self, request, *args, **kwargs): + return Response({'detail': 'Method not allowed.'}, status=HTTP_405_METHOD_NOT_ALLOWED) - return [permission() for permission in self.permission_classes] + def update(self, request, *args, **kwargs): + return Response({'detail': 'Method not allowed.'}, status=HTTP_405_METHOD_NOT_ALLOWED) + + def partial_update(self, request, *args, **kwargs): + return Response({'detail': 'Method not allowed.'}, status=HTTP_405_METHOD_NOT_ALLOWED) + + def destroy(self, request, *args, **kwargs): + return Response({'detail': 'Method not allowed.'}, status=HTTP_405_METHOD_NOT_ALLOWED) def list(self, request, *args, **kwargs): # Return an empty list for the leaderboard-list endpoint return Response([]) + def get_permissions(self): + if self.action in ['create', 'update', 'partial_update', 'destroy']: + return [] # No permissions, effectively disables the action + elif self.action in ['retrieve', 'list']: + self.permission_classes = [LeaderboardNotHidden] + + return [permission() for permission in self.permission_classes] + class SubmissionScoreViewSet(ModelViewSet): queryset = SubmissionScore.objects.all() diff --git a/src/apps/api/views/submissions.py b/src/apps/api/views/submissions.py index fccaeefd4..745cdb521 100644 --- a/src/apps/api/views/submissions.py +++ b/src/apps/api/views/submissions.py @@ -15,6 +15,7 @@ from rest_framework.viewsets import ModelViewSet from rest_framework_csv import renderers from django.core.files.base import ContentFile +from django.http import StreamingHttpResponse from profiles.models import Organization, Membership from tasks.models import Task @@ -23,6 +24,7 @@ from leaderboards.strategies import put_on_leaderboard_by_submission_rule from leaderboards.models import SubmissionScore, Column, Leaderboard + logger = logging.getLogger() @@ -310,6 +312,22 @@ def re_run_many_submissions(self, request): submission.re_run() return Response({}) + # New methods impleted! + @action(detail=False, methods=['get']) + def download_many(self, request): + pks = request.query_params.get('pks') + if pks: + pks = json.loads(pks) # Convert JSON string to list + # Doing a local import here to avoid circular imports + from competitions.tasks import stream_batch_download + # Call the task and get the result (stream) + # in_memory_zip = stream_batch_download.apply_async((pks,)).get() + in_memory_zip = stream_batch_download(pks) + # Stream the response + response = StreamingHttpResponse(in_memory_zip, content_type='application/zip') + response['Content-Disposition'] = 'attachment; filename="bulk_submissions.zip"' + return response + @action(detail=True, methods=('GET',)) def get_details(self, request, pk): submission = super().get_object() @@ -325,14 +343,14 @@ def get_detail_result(self, request, pk): submission = Submission.objects.get(pk=pk) # Check if competition show visualization is true if submission.phase.competition.enable_detailed_results: - # get submission's competition participants - participants = submission.phase.competition.participants.all() - participant_usernames = [participant.user.username for participant in participants] + # get submission's competition approved participants + approved_participants = submission.phase.competition.participants.filter(status=CompetitionParticipant.APPROVED) + participant_usernames = [participant.user.username for participant in approved_participants] # check if in this competition # user is collaborator # or - # user is participant + # user is approved participant # or # user is creator # or diff --git a/src/apps/competitions/tasks.py b/src/apps/competitions/tasks.py index facc8041b..1e5544b7b 100644 --- a/src/apps/competitions/tasks.py +++ b/src/apps/competitions/tasks.py @@ -20,6 +20,10 @@ from django.utils.timezone import now from rest_framework.exceptions import ValidationError +from urllib.request import urlopen +from contextlib import closing +from urllib.error import ContentTooShortError + from celery_config import app from competitions.models import Submission, CompetitionCreationTaskStatus, SubmissionDetails, Competition, \ CompetitionDump, Phase @@ -83,6 +87,7 @@ 'title', 'key', 'hidden', + 'submission_rule', # For later # 'force_submission_to_leaderboard', @@ -98,6 +103,7 @@ 'computation', 'computation_indexes', 'hidden', + 'precision', ] MAX_EXECUTION_TIME_LIMIT = int(os.environ.get('MAX_EXECUTION_TIME_LIMIT', 600)) # time limit of the default queue @@ -261,6 +267,54 @@ def send_child_id(submission, child_id): }) +def retrieve_data(url, data=None): + with closing(urlopen(url, data)) as fp: + headers = fp.info() + + bs = 1024 * 8 + size = -1 + read = 0 + if "content-length" in headers: + size = int(headers["Content-Length"]) + + while True: + block = fp.read(bs) + if not block: + break + read += len(block) + yield(block) + + if size >= 0 and read < size: + raise ContentTooShortError( + "retrieval incomplete: got only %i out of %i bytes" + % (read, size)) + + +def zip_generator(submission_pks): + in_memory_zip = BytesIO() + # logger.info("IN zip generator") + with zipfile.ZipFile(in_memory_zip, 'w', zipfile.ZIP_DEFLATED) as zip_file: + for submission_id in submission_pks: + submission = Submission.objects.get(id=submission_id) + # logger.info(submission.data.data_file) + + short_name = submission.data.data_file.name.split('/')[-1] + url = make_url_sassy(path=submission.data.data_file.name) + for block in retrieve_data(url): + zip_file.writestr(short_name, block) + + in_memory_zip.seek(0) + + return in_memory_zip + + +@app.task(queue='site-worker', soft_time_limit=60 * 60) +def stream_batch_download(submission_pks): + # logger.info("In stream_batch_download") + # logger.info(submission_pks) + return zip_generator(submission_pks) + + @app.task(queue='site-worker', soft_time_limit=60) def _run_submission(submission_pk, task_pks=None, is_scoring=False): """This function is wrapped so that when we run tests we can run this function not @@ -408,6 +462,8 @@ def _get_error_string(error_dict): # call again, to make sure phases get sent to chahub competition.save() logger.info("Competition saved!") + status.dataset.name += f" - {competition.title}" + status.dataset.save() except CompetitionUnpackingException as e: # We want to catch well handled exceptions and display them to the user diff --git a/src/apps/datasets/models.py b/src/apps/datasets/models.py index 597de0309..a487304cb 100644 --- a/src/apps/datasets/models.py +++ b/src/apps/datasets/models.py @@ -102,7 +102,9 @@ def in_use(self): Q(phases__tasks__ingestion_program=self) | Q(phases__tasks__input_data=self) | Q(phases__tasks__reference_data=self) | - Q(phases__tasks__scoring_program=self) + Q(phases__tasks__scoring_program=self) | + Q(phases__starting_kit=self) | + Q(phases__public_data=self) ).values('pk', 'title').distinct() return competitions_in_use diff --git a/src/static/js/ours/client.js b/src/static/js/ours/client.js index 9a8801a6e..19a0f9949 100644 --- a/src/static/js/ours/client.js +++ b/src/static/js/ours/client.js @@ -124,6 +124,31 @@ CODALAB.api = { get_submission_detail_result: function (id) { return CODALAB.api.request('GET', `${URLS.API}submissions/${id}/get_detail_result/`) }, + download_many_submissions: function (pks) { + console.log('Request bulk'); + const params = new URLSearchParams({ pks: JSON.stringify(pks) }); + const url = `${URLS.API}submissions/download_many/?${params}`; + return fetch(url, { + method: 'GET', + headers: { + 'Content-Type': 'application/json' + } + }).then(response => { + if (!response.ok) { + throw new Error('Network response was not ok ' + response.statusText); + } + return response.blob(); + }).then(blob => { + const link = document.createElement('a'); + link.href = window.URL.createObjectURL(blob); + link.download = 'bulk_submissions.zip'; + document.body.appendChild(link); + link.click(); + document.body.removeChild(link); + }).catch(error => { + console.error('Error downloading submissions:', error); + }); + }, /*--------------------------------------------------------------------- Leaderboards diff --git a/src/static/riot/competitions/bundle_management.tag b/src/static/riot/competitions/bundle_management.tag new file mode 100644 index 000000000..78372fee3 --- /dev/null +++ b/src/static/riot/competitions/bundle_management.tag @@ -0,0 +1,273 @@ + + +
+ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
File NameBenchmarkSizeUploadedDelete?
{ dataset.name } +
+ {dataset.competition.title} +
+ 		{ format_file_size(dataset.file_size) }{ timeSince(Date.parse(dataset.created_when)) } ago + + +
+ + +
+
+ No Datasets Yet! +
+ +
+ + +
+
+ {selected_row.name} +
+
+

Details

+ + + + + + + + + + + + + + + +
KeyCreated ByCreated
{selected_row.key}{selected_row.owner_display_name}{pretty_date(selected_row.created_when)}
+ +
Description:
+
+ {selected_row.description} +
+ +
Used by: +
+
+ {comp.title} +
+
+
+
+
+ + Download File + + +
+
+ + + + \ No newline at end of file diff --git a/src/static/riot/competitions/detail/_tabs.tag b/src/static/riot/competitions/detail/_tabs.tag index 6c3fff6f8..b21f1aac1 100644 --- a/src/static/riot/competitions/detail/_tabs.tag +++ b/src/static/riot/competitions/detail/_tabs.tag @@ -33,7 +33,7 @@ data-tab="_tab_page_term"> Terms -
+
Files
diff --git a/src/static/riot/competitions/detail/leaderboards.tag b/src/static/riot/competitions/detail/leaderboards.tag index 95b4fc793..7ddef46ea 100644 --- a/src/static/riot/competitions/detail/leaderboards.tag +++ b/src/static/riot/competitions/detail/leaderboards.tag @@ -41,7 +41,32 @@ - + + + + + You are not a participant of this competition. Please register in My Submissions tab to view the leaderboard. + + + + + + + + Your request to participate in this competition is waiting for an approval from the competition organizer. + + + + + + + + Your request to participate in this competition is denied. Please contact the competition organizer for more details. + + + + + No submissions have been added to this leaderboard yet! @@ -71,6 +96,7 @@ +