From 36d8a9ab8bb8f865f1a5681d708e6bbce17a33d5 Mon Sep 17 00:00:00 2001
From: Alejandro Barrera <alejandro.barrera@duke.edu>
Date: Wed, 4 May 2016 17:06:56 -0400
Subject: [PATCH] skip null from items when testing same type

---
 cwltool/workflow.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/cwltool/workflow.py b/cwltool/workflow.py
index 6b369c823..f7bdaad77 100644
--- a/cwltool/workflow.py
+++ b/cwltool/workflow.py
@@ -94,6 +94,8 @@ def are_same_type(src, sink):  # type: (Any, Any) -> bool
     """
     if isinstance(src, dict) and isinstance(sink, dict):
         if src["type"] == "array" and sink["type"] == "array":
+            if 'null' in sink["items"]:
+                return are_same_type([src["items"]], [it for it in sink["items"] if it != 'null'])
             return are_same_type(src["items"], sink["items"])
         elif src["type"] == sink["type"]:
             return True