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index_full.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width">
<link rel="shortcut icon" type="image/x-icon" href="favicon.ico?">
<title>Waveform</title>
<script>
console.log("")
console.log("%cWaveform v0.9.10 by DM", "color: blue; font-size: large; background: #ccc; border: 1px solid blue;padding: 4px 10px;");
console.log("")
document.addEventListener('keydown', function(e){
if(wav.disable_shortcuts){
e.stopImmediatePropagation(); // for this to be effective it needs to be the first registered listener
return;
}
}, true);
window.Polymer = {dom: 'shadow'}; // this tells Polymer to use fast native dom
</script>
<link rel="import" href="bower_components/polymer/polymer.html">
<link rel="import" href="patch-polymer.html">
<link rel="import" href="bower_components/iron-localstorage/iron-localstorage.html">
<link rel="import" href="bower_components/paper-tooltip/paper-tooltip.html">
<link rel="import" href="bower_components/paper-icon-button/paper-icon-button.html">
<link rel="import" href="bower_components/paper-slider/paper-slider.html">
<link rel="import" href="bower_components/paper-button/paper-button.html">
<link rel="import" href="bower_components/paper-toggle-button/paper-toggle-button.html">
<link rel="import" href="bower_components/paper-toolbar/paper-toolbar.html">
<link rel="import" href="bower_components/iron-a11y-keys/iron-a11y-keys.html">
<link rel="import" href="bower_components/paper-toast/paper-toast.html">
<link rel="import" href="waveform-icons.html">
<link rel="import" href="tile-wall.html">
<link rel="import" href="bower_components/iron-splitter/iron-splitter.html">
<link rel="import" href="tile-element.html">
<link rel="import" href="cross-hair.html">
<link rel="import" href="undo-stack-view.html">
<link rel="import" href="cut-object.html">
<link rel="import" href="parsed-data.html">
<link rel="import" href="file-organiser.html">
<link rel="import" href="drop-zone.html">
<link rel="import" href="floating-pane.html">
<link rel="import" href="document-focus-marker.html">
<link rel="import" href="header-view.html">
<link rel="import" href="managed-canvas.html">
<link rel="import" href="value-transform.html">
<link rel="import" href="rm-plots.html">
<link rel="import" href="tac-plots.html">
<link rel="import" href="wave-plots.html">
<link rel="import" href="cluster-plots.html">
<link rel="prefetch" href="img/demo_youtube_hover.png">
<style is="custom-style">
:root {
user-drag: none;
-webkit-user-drag: none;
user-select: none;
-webkit-user-select: none;
--paper-toolbar-height: 40px;
--paper-toolbar-background: #efefef;
--paper-toolbar-color: #000;
--paper-tooltip-opacity: 0.96;
--paper-tooltip:{
text-align: center;
line-height: 12px;
padding: 4px 6px;
};
--paper-icon-button: {
width: 38px;
height: 38px;
};
--grabber-hover: {
border: 3px solid red;
background: rgba(255,0,0,0.2);
cursor: pointer;
};
--cluster-plot-style:{
border: 1px solid #000;
padding: 1px;
margin-right: 2px;
margin-bottom: 2px;
};
}
a {
color: inherit;
}
p, ul, ol{
margin-top: 6px;
margin-bottom: 6px;
}
ul, ol{
padding-left:10px;
margin-left:10px;
}
canvas, img{
vertical-align: bottom;
}
body{
overflow:hidden;
font-family: sans-serif;
font-size: 0.8em;
position: fixed;
top: 0px;
left: 0px;
height: 100%;
width: 100%;
display: flex;
flex-direction: column;
margin: 0;
}
.info_summary{
position: absolute;
padding: 3px;
top: 0px;
left: 0px;
background: rgba(255,255,255,0.5);
-webkit-transition: opacity 0.5s ease-in-out;
transition: opacity 0.5s ease-in-out;
}
.slider_val{
font-weight: bold;
}
.github_button_filedrop{
cursor: pointer;
margin: 20px 0px 0px 0px;
border: 1px solid #999;
display: inline-block;
padding: 4px 10px 4px 10px;
border-radius: 4px;
background: #eee;
}
.github_button_filedrop:hover{
background: #ddd;
border-color: #777;
}
.youtube_demo_img:hover {
content: url('img/demo_youtube_hover.png');
}
paper-button{
min-width: 40px;
font-size: 0.8em;
border: 1px solid;
}
paper-button[selected] {
background-color: #ffffe0;
color: #c77;
}
paper-toolbar{
box-shadow: inset 0 0 2px 1px #ccc;
transition: height 1s;
}
.grabber_signifier{
position: fixed;
top: 6px;
right: 45px;
color: #f00;
font-weight: bold;
border: 2px solid #f00;
padding: 4px 6px 4px 6px;
border-radius: 4px;
}
.menu_toggle {
position: fixed;
top: 0px;
right: 0px;
background: #efefef;
}
iron-splitter {
background-image: url(img/handle.svg);
}
iron-splitter.horizontal{
background-image: url(img/handle-h.svg);
}
::-webkit-scrollbar {
width: 10px;
height: 10px;
}
::-webkit-scrollbar-button {
width: 0;
height: 0;
display: none;
}
::-webkit-scrollbar-thumb {
background-color: rgba(0,0,0,0.2);
-webkit-box-shadow: inset 1px 1px 0 rgba(0,0,0,0.10),inset 0 -1px 0 rgba(0,0,0,0.07);
}
.cluster_plot{
@apply(--cluster-plot-style);
}
.toolbar_divider{
margin: 0px 3px;
height: 70%;
width: 1px;
background: #B1B1B1;
}
.grabber{
position: absolute;
top: 0px;
left: 0px;
right: 0px;
bottom: 0px;
}
.grabber:hover{
@apply(--grabber-hover);
}
</style>
</head>
<body>
<template is="dom-bind" id="wav">
<iron-localstorage name="waveform" value="{{stored_options}}"></iron-localstorage>
<value-transform value_b="{{options}}" value_a="{{stored_options}}"
a_to_b="_sanitize_options"></value-transform>
<floating-pane id="action_info" grabber_mode="[[grabber_mode]]" hidden>
<div class='pane_title'>Action List [z]</div>
<undo-stack-view
undo_stack="[[cut_undo_stack]]"
redo_stack="[[cut_redo_stack]]"></undo-stack-view>
</floating-pane>
<floating-pane id="tc_info" grabber_mode="[[grabber_mode]]" hidden>
<div class='pane_title'>Temporal auto correlation [t]</div>
<p class="nodrag">
Time window <span class="slider_val">[[options.max_delta_t]] ms</span><br>
<paper-slider pin snaps min="20" max="5000" step="20" value="{{options.max_delta_t}}" style='width:300px;'></paper-slider><br>
</p><p>
The number of bins is fixed at 100.
</p>
</floating-pane>
<floating-pane id="drift_info" grabber_mode="[[grabber_mode]]" hidden>
<div class='pane_title'>Drift [d]</div>
Render the cluster plots and spatial spike plot using a palette that shows the average time for spikes in each pixel (smoothing is applied in the case of the cluster plots but not for the spatial plot). <br><br>
<div style="/* background:#f00; */color: #fff; text-align: center;background: -moz-linear-gradient(left, #ff0000 0%, #00ff00 100%); /* FF3.6+ */ background: -webkit-gradient(linear, left top, right top, color-stop(0%,#ff0000), color-stop(100%,#00ff00)); /* Chrome,Safari4+ */ background: -webkit-linear-gradient(left, #ff0000 0%,#00ff00 100%); /* Chrome10+,Safari5.1+ */ background: -o-linear-gradient(left, #ff0000 0%,#00ff00 100%); /* Opera 11.10+ */ background: -ms-linear-gradient(left, #ff0000 0%,#00ff00 100%); /* IE10+ */ background: linear-gradient(to right, #ff0000 0%,#00ff00 100%); /* W3C */;">early mean time ------ late mean time</div><br><br>
So red means that the spikes have "dissapeared" from that area of the plot as the trial progressed, while green means "new" spikes have "appeared" (scare quotes needed because it could be more complciated than this).<br>
</floating-pane>
<floating-pane id="shortcut_info" grabber_mode="[[grabber_mode]]" style="max-height: 350px;" hidden>
<div class='pane_title'>Shortcuts [k]</div>
<p>
For most of the following shortcuts, if you use <b>alt-x</b> instead of just <b>x</b> you will toggle the settings
pane for the given feature, e.g. <b>alt-r</b> toggles the settings pane for spatial ratemap, whereas <b>r</b>
by itself toggles the actual ratemap plots. (In some cases <b>alt</b> is not needed because toggling the pane is
the only action linked to the shortcut.)
</p><p>
Shorcuts for the plots shown for each group; use <b>shift</b> to select multiple:
<ul>
<li><b>w</b> waveforms</li>
<li><b>r</b> spatial ratemap</li>
<li><b>c</b> directional ratemap ("c" is for circle)</li>
<li><b>v</b> speed ratemap ("v" is for velocity)</li>
<li><b>t</b> temporal autocorrelogram</li>
</ul>
</p><p>
Shorcuts applied to the "active" group, which is the one under the cursor:
<ul>
<li><b>e</b> set the cluster painting destination group to the active group.</li>
<li><b>f</b> set the cluster painting srouce group to the active group. Note you can hold down shift to toggle multiple source groups on/off.</li>
<li><b>s</b> launch the swap dialog for the "active" group.</li>
<li><b>ctrl-c</b> copy the active group's plots and some info text to the system clipboard.</li>
</ul>
</p><p>
Other shortcuts:
<ul>
<li><b>0-9</b> jump to tetrode number with 1s digit 0-9</li>
<li><b>o</b> (the letter "o") toggle 10s digit of tetrode number</li>
<li><b>d</b> toggle drift rendering on/off</li>
<li><b>space</b> hold down space and click with mouse for plot grabbing or removal</li>
<li><b>+/-</b> grow/shrink size of cluster plots (note that "+" is actually the "=" key)</li>
<li><b>enter</b> increment cluster painting destination group</li>
<li><b>esc</b> open/close the toolbar</li>
<li><b>p</b> toggle waveform palette</li>
<li><b>h</b> show header info</li>
<li><b>x</b> show pos settings</li>
<li><b>k</b> show this info ("k" is for keyboard)</li>
<li><b>?</b> open GitHub info in a new tab</li>
<li><b>m,n</b> increase/decrease the size of the cluster plots</li>
</ul>
</p>
</floating-pane>
<floating-pane id="speed_info" grabber_mode="[[grabber_mode]]" hidden>
<div class='pane_title'>Speed ratemap [v]</div>
<p>
Bin size <span class="slider_val">4 cm/s</span><br>
Upper limit <span class="slider_val">45 cm/s</span>
</p><p>
Histogram shows slowest speed at the top, and upper limit speed at the bottom.
</p><p>
WARNING: speed plots are still in alpha testing (unlike everything else which is just about in beta!).
</p>
</floating-pane>
<floating-pane id="waves_info" grabber_mode="[[grabber_mode]]" hidden>
<div class='pane_title'>Waves [w]</div>
<p>
There are two palette modes.
</p><p class="nodrag">
Render in <span class="slider_val">[[options.waves_render_mode]]</span> mode.<br>
<paper-toggle-button checked="{{waves_toggle_raw}}"></paper-toggle-button>
<value-transform value_a="{{options.waves_render_mode}}" value_b="{{waves_toggle_raw}}"
b_to_a="_to_render_mode_str" a_to_b="_from_render_mode_str"
></value-transform>
</p><p>
In "flag" mode, each group from 0 to 30 gets its own color, and is rendered solidly in that color.
</p><p>
In "density" mode, the color of each pixel reflects the proportion of the waves which cross it.
</p>
</floating-pane>
<floating-pane id='header_info' grabber_mode="[[grabber_mode]]" has_search search_text="{{options.header_filter}}"
search_placeholder="filter headers" disable_shortcuts="{{disable_shortcuts}}" hidden>
<div class='pane_title'>File headers [h]</div>
<header-view
set_header="[[set_header]]"
pos_header="[[pos_header]]"
tet_header="[[tet_header]]"
cut_header="[[_get_safe(cut_box,'header')]]"
header_filter="[[options.header_filter]]"
></header-view>
</floating-pane>
<floating-pane id="rm_info" grabber_mode="[[grabber_mode]]" hidden>
<div class='pane_title'>Spatial ratemap [r]</div>
<p class="nodrag">
Bin size <span class="slider_val">[[options.cm_per_spa_bin]] cm</span><br>
<paper-slider pin snaps min="0.5" max="10" step="0.5" value="{{options.cm_per_spa_bin}}" style='width:300px'></paper-slider>
</p><p class="nodrag">
Smoothing kernel boxcar <span class="slider_val">(2x[[options.smoothing_spa_bins]]+1) by (2x[[options.smoothing_spa_bins]]+1) bins</span><br>
<paper-slider pin snaps min="0" max="5" step="1" value="{{options.smoothing_spa_bins}}" style='width:300px;'></paper-slider>
</p><p class="nodrag">
Ratemap frequency values are <span class="slider_val">{{_make_max_rate_caption(options.max_rate_spa)}}</span><br>
<paper-slider pin snaps min="0" max="20" step="1" value="{{options.max_rate_spa}}" style='width:300px'></paper-slider>
</p><p>
The true peak rate is shown as "spa max" when you move your cursor over a group.
</p>
<p class="nodrag">
Ratemap height:<span class="slider_val">{{_make_spa_rm_height_caption(options.spa_rm_height)}}</span><br>
<paper-slider pin snaps min="0" max="400" step="20" value="{{options.spa_rm_height}}"></paper-slider>
</p>
</floating-pane>
<floating-pane id="dir_info" grabber_mode="[[grabber_mode]]" hidden>
<div class='pane_title'>Directional ratemap [c]</div>
<p class="nodrag">
Bin size <span class="slider_val">[[options.deg_per_dir_bin]] degrees</span><br>
<paper-slider pin snaps min="2" max="15" step="1" value="{{options.deg_per_dir_bin}}" style='width:300px'></paper-slider>
</p><p class="nodrag">
Smoothing kernel boxcar <span class="slider_val">([[options.smoothing_dir_bins]]x2+1) bins</span><br>
<paper-slider pin snaps min="0" max="10" step="1" value="{{options.smoothing_dir_bins}}" style='width:300px'></paper-slider>
</p><p>
Note that in 2-spot LED mode, the relative position of the two LEDs is used, in 1-spot LED mode,
the direction of movement is used (this is sometimes refered to as "displacement direction").
</p><p>
The true peak rate is shown as "dir max" when you move your cursor over a group.
</p>
</floating-pane>
<floating-pane id="pos_info" grabber_mode="[[grabber_mode]]" hidden>
<div class='pane_title'>position post processing [x] </div>
<p>
If you tracked with two LEDs you can read in both data streams. "Standard" post-processing will be applied to decide when
the two spots have swapped.
</p><p class="nodrag">
Use <span class="slider_val">[[options.use_n_leds]] LEDs</span>:<br>
<paper-slider class="nodrag" pin snaps min="1" max="2" step="1" value="{{options.use_n_leds}}" style='width:80px'></paper-slider>
</p><p>
The following filtering and smoothing is applied to the one/two data streams separately.
If two LEDs are used, a single estimate of position is produced at the end, using a weighted sum.
</p><p class="nodrag">
Speed <span class="slider_val">{{_make_max_speed_caption(options.speed_filter_mps)}}</span><br>
<paper-slider class="nodrag" pin snaps min="0" max="10" step="0.25" value="{{options.speed_filter_mps}}" style='width:300px'></paper-slider><br>
</p><p>
Where the speed appears to rise above this threshold the data is considered invalid.
</p><p>
Where data is missing (either because no pixels were tracked for the given sample or the above filter invalidated the data),
new values are created by linearly interpolated across the gaps.
</p><p class="nodrag">
Smoothing <span class="slider_val">{{_make_pos_smoothing_caption(options.pos_smoothing_s)}}</span><br>
<paper-slider class="nodrag" pin snaps min="0" max="4" step="0.1" value="{{options.pos_smoothing_s}}" style='width:300px'></paper-slider>
</p><p>
Following filtering for speed and interpolation, the X and Y data is smoothed using a boxcar (i.e. moving average) of the above width.
</p>
</floating-pane>
<!-- grabbed tiles -->
<template is="dom-repeat" items="[[grabbed_tiles]]">
<floating-pane
grabber_mode="[[grabber_mode]]"
initial_x='[[item.x]]'
initial_y='[[item.y]]'
width="auto"
on-close="_close_grabbed_tile">
<div class='pane_title'>[[item.title]]</div>
<tile-element group_model='[[item.group]]' group_num='[[item.group_num]]' class="noborder" style="min-width:100%;"></tile-element>
</floating-pane>
</template>
<!-- grabbed cluster plots -->
<template is="dom-repeat" items="[[grabbed_cluster_plots]]">
<floating-pane
grabber_mode="[[grabber_mode]]"
initial_x='[[item.x]]'
initial_y='[[item.y]]'
on-close="_close_grabbed_cluster_plots"
width="[[options.splitter_c_size]]">
<div class='pane_title'>[[item.title]]</div>
<div style="text-align: center;">
<template is="dom-repeat" items="[[item.plots]]">
<canvas-with-axes class="cluster_plot"
ckey="[[item.ckey]]"
x_label="[[item.x_axis]]"
y_label="[[item.y_axis]]"
fix_height="[[options.cluster_plot_size]]"></canvas-with-axes>
</template>
</div>
</floating-pane>
</template>
<!-- grabbed paths -->
<template is="dom-repeat" items="[[grabbed_paths]]">
<floating-pane
grabber_mode="[[grabber_mode]]"
initial_x='[[item.x]]'
initial_y='[[item.y]]'
width="auto"
on-close="_close_grabbed_path">
<div class='pane_title'>[[item.title]]</div>
<managed-canvas ckey='[[item.plot]]'></tile-element>
</floating-pane>
</template>
<paper-toolbar style$="{{_style_toolbar(options.toggle_toolbar)}}">
<div>
<paper-icon-button icon="waveform:help-outline" on-tap="open_github"></paper-icon-button>
<paper-tooltip position="right" animation-delay="0">help on GitHub [?]</paper-tooltip>
</div>
<div>
<paper-icon-button icon="waveform:keyboard" on-tap="toggle_shorcut_pane"></paper-icon-button>
<paper-tooltip animation-delay="0">keyboard shortcuts [k]</paper-tooltip>
</div>
<div class="toolbar_divider"></div>
<div>
<paper-icon-button icon="waveform:undo" on-tap="_undo" on-mousedown="toggle_action_pane"></paper-icon-button>
<paper-tooltip animation-delay="0">undo [z]<br>right-click for full history [alt-z]</paper-tooltip>
</div>
<div>
<paper-icon-button icon="waveform:redo" on-tap="_redo" on-mousedown="toggle_action_pane"></paper-icon-button>
<paper-tooltip animation-delay="0">redo [y]<br>right-click for full history [alt-z]</paper-tooltip>
</div>
<div class="toolbar_divider"></div>
<div>
<paper-icon-button icon="waveform:format-line-spacing" on-tap="_sort"></paper-icon-button>
<paper-tooltip animation-delay="0">sort on group size [n]</paper-tooltip>
</div>
<div>
<paper-icon-button icon="waveform:cached" on-tap="swap_groups"></paper-icon-button>
<paper-tooltip animation-delay="0">swap/move groups [s]</paper-tooltip>
</div>
<div class="toolbar_divider"></div>
<div>
<paper-icon-button icon="waveform:view-list" on-tap="toggle_header_pane"></paper-icon-button>
<paper-tooltip animation-delay="0">file headers [h]</paper-tooltip>
</div>
<div>
<paper-icon-button icon="waveform:access-time"></paper-icon-button>
<paper-tooltip>toggle drift [d]</paper-tooltip>
</div>
<div>
<paper-icon-button icon="waveform:gesture" on-tap="toggle_pos_pane"></paper-icon-button>
<paper-tooltip animation-delay="0">position post processing settings [x]</paper-tooltip>
</div>
<div class="toolbar_divider"></div>
<div>
<paper-button selected$="{{_yn_to_bool(options.show_waves, 0)}}" on-tap="show_tap" on-mousedown="toggle_palette_pane" id="show_wav">wav</paper-button>
<paper-tooltip animation-delay="0">waves [w]<br>right-click for settings [alt-w]</paper-tooltip>
</div>
<div>
<paper-button selected$="{{_yn_to_bool(options.show_rms, 0)}}" on-tap="show_tap" id="show_rm" on-mousedown="toggle_spa_rm_pane">rm</paper-button>
<paper-tooltip animation-delay="0">spatial ratemap [r]<br>right-click for settings [alt-r]</paper-tooltip>
</div>
<div>
<paper-button selected$="{{_yn_to_bool(options.show_rms, 1)}}" on-tap="show_tap" id="show_dir" on-mousedown="toggle_dir_rm_pane">dir</paper-button>
<paper-tooltip>directional ratemap [c]<br>right-click for settings [alt-c]</paper-tooltip>
</div>
<div>
<paper-button selected$="{{_yn_to_bool(options.show_rms, 2)}}" on-tap="show_tap" id="show_spd" on-mousedown="toggle_speed_rm_pane">spd</paper-button>
<paper-tooltip animation-delay="0">speed ratemap [v]<br>right-click for settings [alt-v]</paper-tooltip>
</div>
<div>
<paper-button selected$="{{_yn_to_bool(options.show_tac, 0)}}" on-tap="show_tap" id="show_tc" on-mousedown="toggle_tac_pane">tc</paper-button>
<paper-tooltip animation-delay="0">temporal autocorrelation [t]<br>right-click for settings [alt-t]</paper-tooltip>
</div>
</paper-toolbar>
<div style="flex: 1; display:flex; flex-direction:row; position:relative;">
<document-focus-marker></document-focus-marker>
<iron-resize-notifier style="display:flex; flex-direction:column;">
<file-organiser
is_dragging_in="{{drop_in_progress}}"
no_files="{{no_files}}"
selected_files="{{selected_files}}"
selected_trial="{{selected_trial}}"
selected_tet_num="{{selected_tet_num}}"
></file-organiser>
<iron-splitter direction="up" size="{{options.splitter_a_size}}"></iron-splitter>
<div style="flex:1 1 0%; position:relative;display: flex; flex-direction: row;">
<managed-canvas style="margin:0 auto;" stretch_height ckey="[[pos_path]]" ></managed-canvas>
<div class="info_summary" style$="[[_info_summary_style(active_group_a)]]">
<div class="info_summary_text">[[_format_timespan(start_end_times)]]</div>
<canvas-with-axes style="width:55px;"
ckey="[[pos_speed_hist]]"
x_label="[[_caption_speed_max(options.speed_rm_max)]]"
fix_height="92" flip_horizontal></canvas-with-axes>
</div>
<div class="grabber" hidden$="{{!grabber_mode}}" on-mouseup="_grab_path"></div>
</div>
<iron-splitter direction="down" size="{{options.splitter_b_size}}"></iron-splitter>
<cluster-plots id="cluster_plots"
groups="[[cut_groups]]"
painter_state="{{cut_painter_state}}"
amplitudes="[[amplitudes]]"
canvas_size="{{options.cluster_plot_size}}"
want_amplitudes="{{want_amplitudes}}"
active_group_a="{{active_group_a}}"
painter_r="{{options.cluster_painter_r}}"
grabber_mode="[[grabber_mode]]"
tool_is_active="[[tool_is_active]]"
on-paint="_paint"
on-grab="_grab_cluster_plots">
</cluster-plots>
</iron-resize-notifier>
<iron-splitter direction="left" size="{{options.splitter_c_size}}"></iron-splitter>
<tile-wall style="flex:1 1 0%; position:relative;"
groups="{{cut_groups}}"
options="[[options]]"
active_group_a="{{active_group_a}}"
active_group_b="{{active_group_b}}"
grabber_mode="[[grabber_mode]]"
is_empty="[[tile_wall_is_empty]]"
splitter_state="[[splitter_state]]"
on-merge_groups="_merge_groups"
on-grab_group="_grab_group"
on-splitter="_splitter"
on-tap_group="_highlight_group"
tool_is_active="[[tool_is_active]]"
></tile-wall>
</div>
<paper-icon-button icon="waveform:menu" class="menu_toggle" on-tap="_toggle_toolbar"></paper-icon-button>
<paper-toast id="toast"></paper-toast>
<div class="grabber_signifier" style$="{{_show(grabber_mode)}}">
grabber mode
</div>
<drop-zone
show_initial="[[no_files]]"
drop_in_progress="[[drop_in_progress]]">
<div class="primary_text">
drag & drop files here
</div>
<div class='secondary_text'>
the following types of data files are recognised:
<b><br>set | pos | tet | cut | clu</b><br>
you can drag further files onto the window at any point<br>
other file types will be ignored
</div>
<div class="initial_extra_under_secondary">
<div class="github_button github_button_filedrop" on-tap="open_github">
goto <b>readme, code, and issues</b> on github
</div><br><br>
<a href="https://www.youtube.com/watch?v=36o69CPu-1E" target="_blank">
<img class="youtube_demo_img" src="img/demo_youtube.png" width="560" height="315"/>
</a>
<br><br>
<span style="color:red; font-weight: bold;">
If you discover bugs of any kind please <a href="https://github.com/d1manson/waveform/issues" target="_blank">report</a> them asap. Happy experimenting!<br>
Note that <a href="https://github.com/d1manson/waveform/issues/24" target="_blank">one or two features</a> from the old version have not yet been implemented here.
</span>
</div>
<div class='initial_extra_bottom_right'>
Waveform v0.9.10, by DM<br> Tested with Chrome 54 <img src="img/chromelogo.png" width="15px" style="float:right;margin-left:2px;"/>
</div>
</drop-zone>
<parsed-data id="parser"
selected_files="[[selected_files]]"
use_n_leds="[[options.use_n_leds]]"
speed_filter_mps="[[options.speed_filter_mps]]"
pos_smoothing_s="[[options.pos_smoothing_s]]"
duration="{{duration}}"
start_end_times="{{start_end_times}}"
spike_times="{{spike_times}}"
pos_xy="{{pos_xy}}"
pos_dir="{{pos_dir}}"
pos_speed="{{pos_speed}}"
amplitudes="{{amplitudes}}"
data_for_gl="{{data_for_gl}}"
cut_box="{{cut_box}}"
tet_header="{{tet_header}}"
pos_header="{{pos_header}}"
set_header="{{set_header}}"
want_data_for_gl="{{want_data_for_gl}}"
want_amplitudes="{{want_amplitudes}}"
want_spike_times="{{want_spike_times}}"
no_groups="{{tile_wall_is_empty}}"
></parsed-data>
<cut-object id="cut"
groups="{{cut_groups}}"
painter_state="{{cut_painter_state}}"
cut_box="[[cut_box]]"
undo_stack_descriptions="{{cut_undo_stack}}"
redo_stack_descriptions="{{cut_redo_stack}}"></cut-object>
<rm-plots
groups="{{cut_groups}}"
pos_path="{{pos_path}}"
pos_speed_hist="{{pos_speed_hist}}"
active_group_a="{{active_group_a}}"
active_group_b="{{active_group_b}}"
spike_times="[[spike_times]]"
pos_xy="[[pos_xy]]"
pos_dir="[[pos_dir]]"
pos_speed="[[pos_speed]]"
show="[[options.show_rms]]"
cm_per_spa_bin="[[options.cm_per_spa_bin]]"
smoothing_spa_bins="[[options.smoothing_spa_bins]]"
max_rate_spa="[[options.max_rate_spa]]"
deg_per_dir_bin="[[options.deg_per_dir_bin]]"
smoothing_dir_bins="[[options.smoothing_dir_bins]]"
speed_rm_max="[[options.speed_rm_max]]"
want_spike_times="{{want_spike_times}}"></rm-plots>
<tac-plots
groups="{{cut_groups}}"
max_delta_t="[[options.max_delta_t]]"
spike_times="[[spike_times]]"
show="[[options.show_tac]]"
want_spike_times="{{want_spike_times}}"></tac-plots>
<wave-plots id="wave_plots"
groups="{{cut_groups}}"
data_for_gl="[[data_for_gl]]"
palette_mode="[[options.waves_render_mode]]"
show_chans="[[options.show_waves]]"
want_data_for_gl="{{want_data_for_gl}}"></wave-plots>
<iron-a11y-keys keys="esc" on-keys-pressed="_toggle_toolbar" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="h+only alt+h" on-keys-pressed="toggle_header_pane" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="alt+p alt+w" on-keys-pressed="toggle_palette_pane" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="p+only" on-keys-pressed="toggle_palette" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="alt+r" on-keys-pressed="toggle_spa_rm_pane" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="alt+c" on-keys-pressed="toggle_dir_rm_pane" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="alt+v" on-keys-pressed="toggle_speed_rm_pane" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="alt+t" on-keys-pressed="toggle_tac_pane" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="k+only alt+k" on-keys-pressed="toggle_keyboard_pane" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="alt+z" on-keys-pressed="toggle_action_pane" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="x+only alt+x" on-keys-pressed="toggle_pos_pane" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="w+only w+shift" on-keys-pressed="show_key_wav" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="r+only r+shift" on-keys-pressed="show_key_rm" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="c+only c+shift" on-keys-pressed="show_key_dir" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="v+only v+shift" on-keys-pressed="show_key_spd" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="t+only t+shift" on-keys-pressed="show_key_tc" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="s+only" on-keys-pressed="swap_groups" target="[[keyboard_target]]"></iron-a11y-keys>
<iron-a11y-keys keys="n+only" on-keys-pressed="_sort" target="[[keyboard_target]]"></iron-a11y-keys>
<!-- TODO: use question mark key when bug is fixed: https://github.com/PolymerElements/iron-a11y-keys-behavior/issues/27#issuecomment-184833697 -->
<iron-a11y-keys keys="¿+only" on-keys-pressed="open_github" target="[[keyboard_target]]"></iron-a11y-keys>
</template>
<script>
"use strict";
var wav = document.getElementById('wav')
var prompt = require("electron-prompt");
wav.keyboard_target = document.querySelector('body'); // passed through to iron-a11y-keys
// :::: define default options and validate values read from localStorage :::::::::::::::
wav._sanitize_options = function(stored_options) {
let opts = {
max_delta_t: 500,
show_rms: 'yyy',
show_tac: 'y',
show_waves: 'yyyy',
cm_per_spa_bin: 2,
smoothing_spa_bins: 2,
max_rate_spa: -1,
deg_per_dir_bin: 6,
smoothing_dir_bins: 3,
waves_render_mode: "density",
use_n_leds: 2,
speed_filter_mps: 4,
pos_smoothing_s: 0.2,
header_filter: '',
spa_rm_height: 120,
cluster_plot_size: 128,
cluster_painter_r: 15,
speed_rm_max: 45,
splitter_a_size: "200px",
splitter_b_size: "300px",
splitter_c_size: "350px",
toggle_toolbar: true
};
if(!stored_options){
return opts;
}
for(let k in opts){
if(stored_options[k] !== undefined){
opts[k] = stored_options[k];
}
}
return opts;
}
// :::: the cutting tools: split, paint, merge, swap ::::::::::::::::::::::::::
wav._splitter = function(e){
if(e.detail.state === "finalize" || e.detail.state === "cancel"){
if(e.detail.state === "cancel"){
if(wav.splitter_state.group_b){
wav.$.cut.undo();
}
}
wav.splitter_state._akey_full = null;
wav.set('splitter_state.group_a', null);
wav.set('splitter_state.group_b', null);
wav.set('splitter_state.metrics', null);
this.set('disable_shortcuts', false);
wav.set('tool_is_active', false);
return;
}
if(e.detail.state === "start"){
wav.splitter_state._akey_full = e.detail.group.akey;
wav.set('splitter_state.group_a', e.detail.group);
this.set('disable_shortcuts', true);
wav.set('tool_is_active', true);
}
if(e.detail.point !== null){
wav.splitter_state._point = e.detail.point;
wav.set('splitter_state.metrics', {
x: e.detail.x,
y: e.detail.y,
w: e.detail.w
});
}
if(e.detail.state === "update"){
if(wav.splitter_state.group_b){
wav.$.cut.undo();
}
let m = this.$.wave_plots.mask_at_vt(wav.splitter_state._akey_full.array, wav.splitter_state._point);
let group_num_a = wav.splitter_state.group_a.group_num;
wav.$.cut.split_group(group_num_a, m);
wav.set('splitter_state.group_a', wav.cut_groups[group_num_a]);
wav.set('splitter_state.group_b', wav.cut_groups[group_num_a + 1]);
}
}
wav._paint = function(e){
if(e.detail.state === "start"){
wav.set('disable_shortcuts', true);
wav.set('tool_is_active', true);
}
if(e.detail.state === "end"){
wav.set('disable_shortcuts', false);
wav.set('tool_is_active', false);
wav.$.cut.transplant_groups(e.detail.dest, e.detail.src_masks);
}
}
wav._merge_groups = function(e){
if(wav.tile_wall_is_empty){ // not sure how this could happend
return;
}
if(e.detail.state === "start"){
wav.set('disable_shortcuts', true);
wav.set('tool_is_active', true);
} else {
if(e.detail.state === "end"){
wav.$.cut.merge_groups(e.detail.a, e.detail.b);
} // else it's cancel
wav.set('tool_is_active', false);
wav.set('disable_shortcuts', false);
}
}
wav.swap_groups = function () {
if (wav.tile_wall_is_empty || wav.tool_is_active) {
return;
}
setTimeout(function() { // this is needed because the prompt box misses key-up somehow
if (wav.active_group_a) {
var a = wav.active_group_a.group_num;
prompt({label: "Swap group " + a + " with group..."})
.then(function(b){
b = parseInt(b);
if(b>=0){
wav.$.cut.swap_groups(a, b);
}
})
} else {
prompt({label: "Swap groups 'a b' (separated by space)..."})
.then(function(abStr){
var parts = abStr.split(" ")
.map(function(x){return parseInt(x.trim());})
.filter(function(x){return x>=0});
if(parts.length == 2){
wav.$.cut.swap_groups(parts[0], parts[1]);
}
});
}
}, 20);
}
// :::: the grab tools: tile, cluster, path ::::::::::::::::::::::::::
wav._grab_group = function(e){
if(!wav.grabbed_tiles){
this.set('grabbed_tiles', []);
}
wav.push('grabbed_tiles', {
title: wav.selected_trial +
" t" + wav.selected_tet_num +
"c" + e.detail.group_num + " [Grabbed]",
group_num: e.detail.group_num,
group: e.detail.group, // this is already sufficently-deeply cloned
x: e.detail.src_client_x + 20,
y: e.detail.src_client_y + 20
});
}
wav._close_grabbed_tile = function(e){
// remove the grabbed tile from the list
wav.splice('grabbed_tiles', wav.grabbed_tiles.indexOf(e.model.item), 1);
}
wav._grab_cluster_plots = function(e){
if(!wav.grabbed_cluster_plots){
this.set('grabbed_cluster_plots', []);
}
wav.push('grabbed_cluster_plots', {
title: wav.selected_trial +
" t" + wav.selected_tet_num,
plots: e.detail.plots, // this is already sufficently-deeply cloned
x: e.detail.src_client_x + 20,
y: e.detail.src_client_y + 20
});
}
wav._close_grabbed_cluster_plots = function(e){
// remove the grabbed plots from the list
wav.splice('grabbed_cluster_plots', wav.grabbed_cluster_plots.indexOf(e.model.item), 1);
}
wav._grab_path = function(e){
if(!wav.grabbed_paths){
this.set('grabbed_paths', []);
}
let rect = e.target.getBoundingClientRect();
wav.push('grabbed_paths', {
title: wav.selected_trial,
plot: wav.pos_path,
x: rect.left + 20,
y: rect.top + 20
});
}
wav._close_grabbed_path = function(e){
// remove the grabbed plots from the list
wav.splice('grabbed_paths', wav.grabbed_paths.indexOf(e.model.item), 1);
}
// :::: plot toggling :::::::::::::::::::::::::::::::
wav.toggle_show = function(id, shiftKey){
// This is a bit ugly sadly. We want to allow basic toggling
// without shift, and multi-toggling with shift.
let result;
if(!shiftKey){
result = {
waves: 'nnnn',
tac: 'n',
rms: 'nnn'
};
switch (id){
case "show_wav":
result.waves = 'yyyy';
break;
case "show_tc":
result.tac = 'y';
break;
case "show_rm":
result.rms = "ynn";
break;
case "show_dir":
result.rms = "nyn";
break;
case "show_spd":
result.rms = "nny";
break;
}
} else {
result = {
waves: wav.options.show_waves,
tac: wav.options.show_tac,
rms: wav.options.show_rms
};
let n_selected = (result.waves.indexOf('y') > -1) +
(result.tac === 'y') +
(result.rms[0] === 'y') + (result.rms[1] === 'y') + (result.rms[2] === 'y');
switch (id){
case "show_wav":
if(result.waves === "yyyy" && n_selected > 1){
result.waves = 'nnnn';
} else {
result.waves = 'yyyy';
}
break;
case "show_tc":
if(result.tac === "y" && n_selected > 1){
result.tac = 'n';
} else {
result.tac = 'y';
}
break;