The repository stores files that were used to perform Tbx5 transcription factor analysis with selected Mus musculus heart cells.
Directory descriptions:
- Figures/ stores images that were generated by main R program, and created for analysis' steps' visualization.
- Intermediate_data_files/ stores CSV and TXT format files that were used for intermediate analysis in R program.
- Inputs/ stores data files of the selected samples. The directory
contains two subdirectories:
- BED/ stores text files describing genomic positions of the selected samples;
- BigBed/ stores binary files describing genomic positions of the selected samples.
- Latex/ stores files that were used to generate final thesis using Latex.
- Programs/ directory contains main R program file and additional subdirectory Scripts/ that stores Shell and Perl scripts that were used to perform file format conversions (from bigBed to BED, from BED to FASTA) and ease analysis in main R program.
Results of the analysis can be found here.