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Trouble with the install scripts step on Windows (WSL) using conda #179

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espy1412 opened this issue Oct 6, 2021 · 1 comment
Closed

Trouble with the install scripts step on Windows (WSL) using conda #179

espy1412 opened this issue Oct 6, 2021 · 1 comment
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@espy1412
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espy1412 commented Oct 6, 2021 •
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I get many errors on the install step for the scripts.

Expected Behavior

Script install on an auxiliary Windows 10 system fails. None of the alternative techniques from previous issues #58 and #61 seem to work (or be actively maintained, in the case of the safer-install channel).

Current Behavior

This is what happens immediately after I start the ./scripts command in Step 8 of the Wiki instructions for Moseq2 installation on WIndows using Conda:

Processing /home/volla/moseq2-app
DEPRECATION: A future pip version will change local packages to be built in-place without first copying to a temporary directory. We recommend you use --use-feature=in-tree-build to test your packages with this new behavior before it becomes the default.
pip 21.3 will remove support for this functionality. You can find discussion regarding this at pypa/pip#7555.
Collecting moseq2-extract@ git+https://github.com/dattalab/moseq2-extract.git@dev
Cloning https://github.com/dattalab/moseq2-extract.git (to revision dev) to /tmp/pip-install-cx7hllpl/moseq2-extract_71c7e88bbefe4f9c8f286c59cc4dcfb1
Running command git clone -q https://github.com/dattalab/moseq2-extract.git /tmp/pip-install-cx7hllpl/moseq2-extract_71c7e88bbefe4f9c8f286c59cc4dcfb1
Username for 'https://github.com': espy1412@yahoo.com
Password for 'https://espy1412@yahoo.com@github.com':
Running command git checkout -b dev --track origin/dev
Switched to a new branch 'dev'
Branch 'dev' set up to track remote branch 'dev' from 'origin'.
Resolved https://github.com/dattalab/moseq2-extract.git to commit e478e2f96eaee6c25b48e8b9a158e9e7f53aea5f
Collecting moseq2-pca@ git+https://github.com/dattalab/moseq2-pca.git@dev
Cloning https://github.com/dattalab/moseq2-pca.git (to revision dev) to /tmp/pip-install-cx7hllpl/moseq2-pca_9a5d4d41d4784cce8a3aa170db9956c0
Running command git clone -q https://github.com/dattalab/moseq2-pca.git /tmp/pip-install-cx7hllpl/moseq2-pca_9a5d4d41d4784cce8a3aa170db9956c0
Username for 'https://github.com': espy1412@yahoo.com
Password for 'https://espy1412@yahoo.com@github.com':
Running command git checkout -b dev --track origin/dev
Switched to a new branch 'dev'
Branch 'dev' set up to track remote branch 'dev' from 'origin'.
Resolved https://github.com/dattalab/moseq2-pca.git to commit 554d23baa69f07efce54d97243dd32f074326245
Collecting moseq2-model@ git+https://github.com/dattalab/moseq2-model.git@dev
Cloning https://github.com/dattalab/moseq2-model.git (to revision dev) to /tmp/pip-install-cx7hllpl/moseq2-model_23e6854cdfe64167acc4d10e17db67e2
Running command git clone -q https://github.com/dattalab/moseq2-model.git /tmp/pip-install-cx7hllpl/moseq2-model_23e6854cdfe64167acc4d10e17db67e2
Username for 'https://github.com': espy1412@yahoo.com
Password for 'https://espy1412@yahoo.com@github.com':
Running command git checkout -b dev --track origin/dev
Switched to a new branch 'dev'
Branch 'dev' set up to track remote branch 'dev' from 'origin'.
Resolved https://github.com/dattalab/moseq2-model.git to commit 8b5d2c096ea346f92d9efa2cbb29c3d29a0be812
Collecting moseq2-viz@ git+https://github.com/dattalab/moseq2-viz.git@dev
Cloning https://github.com/dattalab/moseq2-viz.git (to revision dev) to /tmp/pip-install-cx7hllpl/moseq2-viz_44052a03fd0c42c3be5548319a180a20
Running command git clone -q https://github.com/dattalab/moseq2-viz.git /tmp/pip-install-cx7hllpl/moseq2-viz_44052a03fd0c42c3be5548319a180a20
Username for 'https://github.com': espy1412@yahoo.com
Password for 'https://espy1412@yahoo.com@github.com':
Running command git checkout -b dev --track origin/dev
Switched to a new branch 'dev'
Branch 'dev' set up to track remote branch 'dev' from 'origin'.
Resolved https://github.com/dattalab/moseq2-viz.git to commit dd61d1153d63949d5c2b98e546b6ee22912d9df0
Collecting jupyter-bokeh==2.0.3
Using cached jupyter_bokeh-2.0.3-py3-none-any.whl
Requirement already satisfied: jupyter==1.0.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from moseq2-app==0.2.2) (1.0.0)
Collecting ruamel.yaml==0.16.5
Using cached ruamel.yaml-0.16.5-py2.py3-none-any.whl (123 kB)
Collecting seaborn==0.11.0
Using cached seaborn-0.11.0-py3-none-any.whl (283 kB)
Collecting bokeh==2.2.1
Using cached bokeh-2.2.1-py3-none-any.whl
Requirement already satisfied: fastparquet==0.4.1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from moseq2-app==0.2.2) (0.4.1)
Requirement already satisfied: pandas==1.0.5 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from moseq2-app==0.2.2) (1.0.5)
Collecting joblib==0.15.1
Using cached joblib-0.15.1-py3-none-any.whl (298 kB)
Collecting scipy==1.3.2
Using cached scipy-1.3.2-cp37-cp37m-manylinux1_x86_64.whl (25.2 MB)
Requirement already satisfied: qgrid==1.3.1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from moseq2-app==0.2.2) (1.3.1)
Requirement already satisfied: ipython==7.14.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from moseq2-app==0.2.2) (7.14.0)
Requirement already satisfied: ipywidgets==7.5.1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from moseq2-app==0.2.2) (7.5.1)
Requirement already satisfied: numpy==1.18.3 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from moseq2-app==0.2.2) (1.18.3)
Requirement already satisfied: scikit-image==0.16.2 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from moseq2-app==0.2.2) (0.16.2)
Collecting scikit-learn==0.20.3
Using cached scikit_learn-0.20.3-cp37-cp37m-manylinux1_x86_64.whl (5.4 MB)
Collecting opencv-python==4.1.2.30
Using cached opencv_python-4.1.2.30-cp37-cp37m-manylinux1_x86_64.whl (28.3 MB)
Collecting h5py==2.10.0
Using cached h5py-2.10.0-cp37-cp37m-manylinux1_x86_64.whl (2.9 MB)
Collecting matplotlib==3.1.2
Using cached matplotlib-3.1.2-cp37-cp37m-manylinux1_x86_64.whl (13.1 MB)
Collecting plotly==4.14.3
Using cached plotly-4.14.3-py2.py3-none-any.whl (13.2 MB)
Requirement already satisfied: PyYAML>=3.10 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from bokeh==2.2.1->moseq2-app==0.2.2) (5.4.1)
Requirement already satisfied: typing-extensions>=3.7.4 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from bokeh==2.2.1->moseq2-app==0.2.2) (3.10.0.2)
Requirement already satisfied: tornado>=5.1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from bokeh==2.2.1->moseq2-app==0.2.2) (6.1)
Requirement already satisfied: pillow>=7.1.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from bokeh==2.2.1->moseq2-app==0.2.2) (8.1.0)
Requirement already satisfied: packaging>=16.8 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from bokeh==2.2.1->moseq2-app==0.2.2) (21.0)
Requirement already satisfied: python-dateutil>=2.1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from bokeh==2.2.1->moseq2-app==0.2.2) (2.8.2)
Requirement already satisfied: Jinja2>=2.7 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from bokeh==2.2.1->moseq2-app==0.2.2) (3.0.1)
Requirement already satisfied: thrift>=0.11.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from fastparquet==0.4.1->moseq2-app==0.2.2) (0.11.0)
Requirement already satisfied: numba>=0.28 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from fastparquet==0.4.1->moseq2-app==0.2.2) (0.53.1)
Requirement already satisfied: six in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from fastparquet==0.4.1->moseq2-app==0.2.2) (1.16.0)
Requirement already satisfied: jedi>=0.10 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipython==7.14.0->moseq2-app==0.2.2) (0.18.0)
Requirement already satisfied: backcall in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipython==7.14.0->moseq2-app==0.2.2) (0.2.0)
Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipython==7.14.0->moseq2-app==0.2.2) (3.0.20)
Requirement already satisfied: pexpect in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipython==7.14.0->moseq2-app==0.2.2) (4.8.0)
Requirement already satisfied: pygments in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipython==7.14.0->moseq2-app==0.2.2) (2.10.0)
Requirement already satisfied: pickleshare in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipython==7.14.0->moseq2-app==0.2.2) (0.7.5)
Requirement already satisfied: setuptools>=18.5 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipython==7.14.0->moseq2-app==0.2.2) (58.0.4)
Requirement already satisfied: decorator in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipython==7.14.0->moseq2-app==0.2.2) (5.1.0)
Requirement already satisfied: traitlets>=4.2 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipython==7.14.0->moseq2-app==0.2.2) (5.1.0)
Requirement already satisfied: ipykernel>=4.5.1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipywidgets==7.5.1->moseq2-app==0.2.2) (5.5.5)
Requirement already satisfied: nbformat>=4.2.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipywidgets==7.5.1->moseq2-app==0.2.2) (5.1.3)
Requirement already satisfied: widgetsnbextension~=3.5.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipywidgets==7.5.1->moseq2-app==0.2.2) (3.5.1)
Requirement already satisfied: notebook in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from jupyter==1.0.0->moseq2-app==0.2.2) (6.4.4)
Requirement already satisfied: qtconsole in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from jupyter==1.0.0->moseq2-app==0.2.2) (5.1.1)
Requirement already satisfied: jupyter-console in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from jupyter==1.0.0->moseq2-app==0.2.2) (6.4.0)
Requirement already satisfied: nbconvert in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from jupyter==1.0.0->moseq2-app==0.2.2) (6.2.0)
Requirement already satisfied: cycler>=0.10 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from matplotlib==3.1.2->moseq2-app==0.2.2) (0.10.0)
Requirement already satisfied: kiwisolver>=1.0.1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from matplotlib==3.1.2->moseq2-app==0.2.2) (1.3.2)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from matplotlib==3.1.2->moseq2-app==0.2.2) (2.4.7)
Requirement already satisfied: pytz>=2017.2 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from pandas==1.0.5->moseq2-app==0.2.2) (2021.3)
Collecting retrying>=1.3.3
Using cached retrying-1.3.3-py3-none-any.whl
Collecting ruamel.yaml.clib>=0.1.2
Using cached ruamel.yaml.clib-0.2.6-cp37-cp37m-manylinux1_x86_64.whl (546 kB)
Requirement already satisfied: networkx>=2.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from scikit-image==0.16.2->moseq2-app==0.2.2) (2.5)
Requirement already satisfied: imageio>=2.3.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from scikit-image==0.16.2->moseq2-app==0.2.2) (2.9.0)
Requirement already satisfied: PyWavelets>=0.4.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from scikit-image==0.16.2->moseq2-app==0.2.2) (1.1.1)
Requirement already satisfied: jupyter-client in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from ipykernel>=4.5.1->ipywidgets==7.5.1->moseq2-app==0.2.2) (7.0.6)
Requirement already satisfied: parso<0.9.0,>=0.8.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from jedi>=0.10->ipython==7.14.0->moseq2-app==0.2.2) (0.8.2)
Requirement already satisfied: MarkupSafe>=2.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from Jinja2>=2.7->bokeh==2.2.1->moseq2-app==0.2.2) (2.0.1)
Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from nbformat>=4.2.0->ipywidgets==7.5.1->moseq2-app==0.2.2) (4.0.1)
Requirement already satisfied: jupyter-core in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from nbformat>=4.2.0->ipywidgets==7.5.1->moseq2-app==0.2.2) (4.8.1)
Requirement already satisfied: ipython-genutils in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from nbformat>=4.2.0->ipywidgets==7.5.1->moseq2-app==0.2.2) (0.2.0)
Requirement already satisfied: attrs>=17.4.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets==7.5.1->moseq2-app==0.2.2) (21.2.0)
Requirement already satisfied: importlib-metadata in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets==7.5.1->moseq2-app==0.2.2) (4.8.1)
Requirement already satisfied: pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets==7.5.1->moseq2-app==0.2.2) (0.17.3)
Requirement already satisfied: prometheus-client in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from notebook->jupyter==1.0.0->moseq2-app==0.2.2) (0.11.0)
Requirement already satisfied: argon2-cffi in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from notebook->jupyter==1.0.0->moseq2-app==0.2.2) (20.1.0)
Requirement already satisfied: terminado>=0.8.3 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from notebook->jupyter==1.0.0->moseq2-app==0.2.2) (0.12.1)
Requirement already satisfied: pyzmq>=17 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from notebook->jupyter==1.0.0->moseq2-app==0.2.2) (22.3.0)
Requirement already satisfied: Send2Trash>=1.5.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from notebook->jupyter==1.0.0->moseq2-app==0.2.2) (1.8.0)
Requirement already satisfied: nest-asyncio>=1.5 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from jupyter-client->ipykernel>=4.5.1->ipywidgets==7.5.1->moseq2-app==0.2.2) (1.5.1)
Requirement already satisfied: entrypoints in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from jupyter-client->ipykernel>=4.5.1->ipywidgets==7.5.1->moseq2-app==0.2.2) (0.3)
Requirement already satisfied: llvmlite<0.37,>=0.36.0rc1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from numba>=0.28->fastparquet==0.4.1->moseq2-app==0.2.2) (0.36.0)
Requirement already satisfied: wcwidth in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython==7.14.0->moseq2-app==0.2.2) (0.2.5)
Requirement already satisfied: ptyprocess in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from terminado>=0.8.3->notebook->jupyter==1.0.0->moseq2-app==0.2.2) (0.7.0)
Requirement already satisfied: cffi>=1.0.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from argon2-cffi->notebook->jupyter==1.0.0->moseq2-app==0.2.2) (1.14.6)
Requirement already satisfied: pycparser in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from cffi>=1.0.0->argon2-cffi->notebook->jupyter==1.0.0->moseq2-app==0.2.2) (2.20)
Requirement already satisfied: zipp>=0.5 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from importlib-metadata->jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets==7.5.1->moseq2-app==0.2.2) (3.6.0)
Collecting tqdm==4.40.0
Using cached tqdm-4.40.0-py2.py3-none-any.whl (54 kB)
Collecting click==7.0
Using cached Click-7.0-py2.py3-none-any.whl (81 kB)
Collecting cytoolz==0.10.1
Using cached cytoolz-0.10.1.tar.gz (475 kB)
Collecting statsmodels==0.10.2
Using cached statsmodels-0.10.2-cp37-cp37m-manylinux1_x86_64.whl (8.1 MB)
Requirement already satisfied: toolz>=0.8.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from cytoolz==0.10.1->moseq2-extract@ git+https://github.com/dattalab/moseq2-extract.git@dev->moseq2-app==0.2.2) (0.11.1)
Collecting patsy>=0.4.0
Using cached patsy-0.5.2-py2.py3-none-any.whl (233 kB)
Collecting pyhsmm@ git+https://github.com/mattjj/pyhsmm.git@master
Cloning https://github.com/mattjj/pyhsmm.git (to revision master) to /tmp/pip-install-cx7hllpl/pyhsmm_91a4d743af314a438b810f58ced54af0
Running command git clone -q https://github.com/mattjj/pyhsmm.git /tmp/pip-install-cx7hllpl/pyhsmm_91a4d743af314a438b810f58ced54af0
Resolved https://github.com/mattjj/pyhsmm.git to commit e6cfde5acb98401c2e727ca59a49ee0bfe86cf9d
Running command git submodule update --init --recursive -q
Collecting pybasicbayes@ git+https://github.com/mattjj/pybasicbayes.git@master
Cloning https://github.com/mattjj/pybasicbayes.git (to revision master) to /tmp/pip-install-cx7hllpl/pybasicbayes_976f573a05bf4f079b89cbd002a52e5b
Running command git clone -q https://github.com/mattjj/pybasicbayes.git /tmp/pip-install-cx7hllpl/pybasicbayes_976f573a05bf4f079b89cbd002a52e5b
Resolved https://github.com/mattjj/pybasicbayes.git to commit 61f65ad6c781288605ec5f7347efcc5dbd73c4fc
Collecting autoregressive@ git+https://github.com/dattalab/pyhsmm-autoregressive.git@master
Cloning https://github.com/dattalab/pyhsmm-autoregressive.git (to revision master) to /tmp/pip-install-cx7hllpl/autoregressive_6176bed77e90459ba1f3c22204d43345
Running command git clone -q https://github.com/dattalab/pyhsmm-autoregressive.git /tmp/pip-install-cx7hllpl/autoregressive_6176bed77e90459ba1f3c22204d43345
Resolved https://github.com/dattalab/pyhsmm-autoregressive.git to commit 2a4c73c08dcda959b9bac2f03a2b976dabbc37af
Collecting six
Using cached six-1.15.0-py2.py3-none-any.whl (10 kB)
Collecting cython==0.29.14
Using cached Cython-0.29.14-cp37-cp37m-manylinux1_x86_64.whl (2.1 MB)
Collecting future==0.18.2
Using cached future-0.18.2-py3-none-any.whl
Collecting nose
Using cached nose-1.3.7-py3-none-any.whl (154 kB)
Collecting pathspec==0.5.3
Using cached pathspec-0.5.3-py3-none-any.whl
Collecting dask==2.19.0
Using cached dask-2.19.0-py3-none-any.whl (824 kB)
Collecting distributed==2.19.0
Using cached distributed-2.19.0-py3-none-any.whl (643 kB)
Collecting chest==0.2.3
Using cached chest-0.2.3-py3-none-any.whl
Collecting dask-jobqueue==0.7.0
Using cached dask_jobqueue-0.7.0-py2.py3-none-any.whl (35 kB)
Collecting psutil==5.6.7
Using cached psutil-5.6.7.tar.gz (448 kB)
Collecting heapdict
Using cached HeapDict-1.0.1-py3-none-any.whl (3.9 kB)
Requirement already satisfied: cloudpickle>=1.3.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from distributed==2.19.0->moseq2-pca@ git+https://github.com/dattalab/moseq2-pca.git@dev->moseq2-app==0.2.2) (2.0.0)
Collecting zict>=0.1.3
Using cached zict-2.0.0-py3-none-any.whl (10 kB)
Collecting msgpack>=0.6.0
Using cached msgpack-1.0.2-cp37-cp37m-manylinux1_x86_64.whl (273 kB)
Collecting tblib>=1.6.0
Using cached tblib-1.7.0-py2.py3-none-any.whl (12 kB)
Collecting sortedcontainers!=2.0.0,!=2.0.1
Using cached sortedcontainers-2.4.0-py2.py3-none-any.whl (29 kB)
Collecting dtaidistance==1.2.3
Using cached dtaidistance-1.2.3.tar.gz (318 kB)
Collecting networkx>=2.0
Using cached networkx-2.4-py3-none-any.whl (1.6 MB)
Requirement already satisfied: nbclient<0.6.0,>=0.5.0 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from nbconvert->jupyter==1.0.0->moseq2-app==0.2.2) (0.5.4)
Requirement already satisfied: jupyterlab-pygments in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from nbconvert->jupyter==1.0.0->moseq2-app==0.2.2) (0.1.2)
Requirement already satisfied: defusedxml in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from nbconvert->jupyter==1.0.0->moseq2-app==0.2.2) (0.7.1)
Requirement already satisfied: bleach in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from nbconvert->jupyter==1.0.0->moseq2-app==0.2.2) (4.1.0)
Requirement already satisfied: testpath in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from nbconvert->jupyter==1.0.0->moseq2-app==0.2.2) (0.5.0)
Requirement already satisfied: pandocfilters>=1.4.1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from nbconvert->jupyter==1.0.0->moseq2-app==0.2.2) (1.5.0)
Requirement already satisfied: mistune<2,>=0.8.1 in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from nbconvert->jupyter==1.0.0->moseq2-app==0.2.2) (0.8.4)
Requirement already satisfied: webencodings in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from bleach->nbconvert->jupyter==1.0.0->moseq2-app==0.2.2) (0.5.1)
Requirement already satisfied: qtpy in /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages (from qtconsole->jupyter==1.0.0->moseq2-app==0.2.2) (1.11.2)
Building wheels for collected packages: moseq2-app, moseq2-extract, cytoolz, moseq2-model, autoregressive, pybasicbayes, moseq2-pca, psutil, moseq2-viz, dtaidistance, pyhsmm
Building wheel for moseq2-app (setup.py) ... done
Created wheel for moseq2-app: filename=moseq2_app-0.2.2-py3-none-any.whl size=101650 sha256=5a8e37b9806cc4b6d43fc5153d9e9216c9a44a7791fc722354c591553ddb8beb
Stored in directory: /home/volla/.cache/pip/wheels/59/69/04/cc77b79c2a559de6be7f3df7803bbeba2d4d6a4e03af2bfb4d
Building wheel for moseq2-extract (setup.py) ... done
Created wheel for moseq2-extract: filename=moseq2_extract-0.8.1-py3-none-any.whl size=77176 sha256=52c5c3474d604ca77d1392deb48f1b7d3f0d577db26d564942bacd07f9eeed38
Stored in directory: /tmp/pip-ephem-wheel-cache-kib6rp9r/wheels/d4/05/80/8772003f1efddca4af8ab0e07120828644fbcb4410d266cfbf
Building wheel for cytoolz (setup.py) ... error

ERROR: Command errored out with exit status 1:
command: /home/volla/miniconda3/envs/moseq2-app/bin/python3.7 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-cx7hllpl/cytoolz_2c16cf4bf5fc472db4fcad01ed90f66a/setup.py'"'"'; file='"'"'/tmp/pip-install-cx7hllpl/cytoolz_2c16cf4bf5fc472db4fcad01ed90f66a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-y7dceywf
cwd: /tmp/pip-install-cx7hllpl/cytoolz_2c16cf4bf5fc472db4fcad01ed90f66a/
Complete output (58 lines):
[1/5] Cythonizing cytoolz/dicttoolz.pyx
[2/5] Cythonizing cytoolz/functoolz.pyx
[3/5] Cythonizing cytoolz/itertoolz.pyx
[4/5] Cythonizing cytoolz/recipes.pyx
[5/5] Cythonizing cytoolz/utils.pyx
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/compatibility.py -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/utils_test.py -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/_signatures.py -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/_version.py -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/init.py -> build/lib.linux-x86_64-3.7/cytoolz
creating build/lib.linux-x86_64-3.7/cytoolz/curried
copying cytoolz/curried/exceptions.py -> build/lib.linux-x86_64-3.7/cytoolz/curried
copying cytoolz/curried/operator.py -> build/lib.linux-x86_64-3.7/cytoolz/curried
copying cytoolz/curried/init.py -> build/lib.linux-x86_64-3.7/cytoolz/curried
copying cytoolz/dicttoolz.pyx -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/functoolz.pyx -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/itertoolz.pyx -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/recipes.pyx -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/utils.pyx -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/cpython.pxd -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/dicttoolz.pxd -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/functoolz.pxd -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/itertoolz.pxd -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/recipes.pxd -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/utils.pxd -> build/lib.linux-x86_64-3.7/cytoolz
copying cytoolz/init.pxd -> build/lib.linux-x86_64-3.7/cytoolz
creating build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/dev_skip_test.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_compatibility.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_curried.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_curried_toolzlike.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_dev_skip_test.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_dicttoolz.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_docstrings.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_doctests.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_embedded_sigs.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_functoolz.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_inspect_args.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_itertoolz.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_none_safe.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_recipes.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_serialization.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_signatures.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_tlz.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
copying cytoolz/tests/test_utils.py -> build/lib.linux-x86_64-3.7/cytoolz/tests
running build_ext
building 'cytoolz.dicttoolz' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/cytoolz
/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/volla/miniconda3/envs/moseq2-app/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/volla/miniconda3/envs/moseq2-app/include -fPIC -I/home/volla/miniconda3/envs/moseq2-app/include/python3.7m -c cytoolz/dicttoolz.c -o build/temp.linux-x86_64-3.7/cytoolz/dicttoolz.o
unable to execute '/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc': No such file or directory
error: command '/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc' failed with exit status 1

ERROR: Failed building wheel for cytoolz
Running setup.py clean for cytoolz
Building wheel for moseq2-model (setup.py) ... done
Created wheel for moseq2-model: filename=moseq2_model-0.5.0-py3-none-any.whl size=34272 sha256=a1a9b247584e536bcd1b955033f045e068c66d1facc1a9512f27fa3f1084a83b
Stored in directory: /tmp/pip-ephem-wheel-cache-kib6rp9r/wheels/e5/4e/dd/1626e02d306d9e8519c47b7696e706fe9735f6f3ada8a50b13
Building wheel for autoregressive (setup.py) ... error

ERROR: Command errored out with exit status 1:
command: /home/volla/miniconda3/envs/moseq2-app/bin/python3.7 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-cx7hllpl/autoregressive_6176bed77e90459ba1f3c22204d43345/setup.py'"'"'; file='"'"'/tmp/pip-install-cx7hllpl/autoregressive_6176bed77e90459ba1f3c22204d43345/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ysn2tmou
cwd: /tmp/pip-install-cx7hllpl/autoregressive_6176bed77e90459ba1f3c22204d43345/
Complete output (17 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/autoregressive
copying autoregressive/distributions.py -> build/lib.linux-x86_64-3.7/autoregressive
copying autoregressive/models.py -> build/lib.linux-x86_64-3.7/autoregressive
copying autoregressive/util.py -> build/lib.linux-x86_64-3.7/autoregressive
copying autoregressive/init.py -> build/lib.linux-x86_64-3.7/autoregressive
running build_ext
building 'autoregressive.messages' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/autoregressive
/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/volla/miniconda3/envs/moseq2-app/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/volla/miniconda3/envs/moseq2-app/include -fPIC -Iautoregressive -I/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/numpy/core/include -Ideps -I/home/volla/miniconda3/envs/moseq2-app/include/python3.7m -c autoregressive/messages.cpp -o build/temp.linux-x86_64-3.7/autoregressive/messages.o -O2 -fopenmp -std=c++11 -DEIGEN_NO_MALLOC -DNDEBUG -w
unable to execute '/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc': No such file or directory
error: command '/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc' failed with exit status 1

ERROR: Failed building wheel for autoregressive
Running setup.py clean for autoregressive
Building wheel for pybasicbayes (setup.py) ... done
Created wheel for pybasicbayes: filename=pybasicbayes-0.2.4-cp37-cp37m-linux_x86_64.whl size=71900 sha256=dceb6ca9d2ebb065436ed83a4fcfae86b1cc4c2b9bed8e0b77a472d8380846b9
Stored in directory: /tmp/pip-ephem-wheel-cache-kib6rp9r/wheels/a1/59/b7/5d33ac2535bd1a92ed2da0cf55d7d8880bb800aa5b01a05867
Building wheel for moseq2-pca (setup.py) ... done
Created wheel for moseq2-pca: filename=moseq2_pca-0.4.1-py3-none-any.whl size=35226 sha256=35d8bec8e28d69a60da1cdb9600c67b500dd06e1187ef5e1f692a8c093e5da6f
Stored in directory: /tmp/pip-ephem-wheel-cache-kib6rp9r/wheels/7a/27/9d/c4d843b71e260dfda7505465e9e3998c14f6046980bbd673d2
Building wheel for psutil (setup.py) ... error

ERROR: Command errored out with exit status 1:
command: /home/volla/miniconda3/envs/moseq2-app/bin/python3.7 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-cx7hllpl/psutil_d10237e93ff44d3f9e4f7d0e815415b0/setup.py'"'"'; file='"'"'/tmp/pip-install-cx7hllpl/psutil_d10237e93ff44d3f9e4f7d0e815415b0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_de_xbcq
cwd: /tmp/pip-install-cx7hllpl/psutil_d10237e93ff44d3f9e4f7d0e815415b0/
Complete output (41 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/psutil
copying psutil/_common.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_compat.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_psaix.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_psbsd.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_pslinux.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_psosx.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_psposix.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_pssunos.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_pswindows.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/init.py -> build/lib.linux-x86_64-3.7/psutil
creating build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/runner.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_aix.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_bsd.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_connections.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_contracts.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_linux.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_memory_leaks.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_misc.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_osx.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_posix.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_process.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_sunos.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_system.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_unicode.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_windows.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/init.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/main.py -> build/lib.linux-x86_64-3.7/psutil/tests
running build_ext
building 'psutil._psutil_linux' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/psutil
/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/volla/miniconda3/envs/moseq2-app/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/volla/miniconda3/envs/moseq2-app/include -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_VERSION=567 -DPSUTIL_LINUX=1 -DPSUTIL_ETHTOOL_MISSING_TYPES=1 -I/home/volla/miniconda3/envs/moseq2-app/include/python3.7m -c psutil/_psutil_common.c -o build/temp.linux-x86_64-3.7/psutil/_psutil_common.o
unable to execute '/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc': No such file or directory
error: command '/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc' failed with exit status 1

ERROR: Failed building wheel for psutil
Running setup.py clean for psutil
Building wheel for moseq2-viz (setup.py) ... done
Created wheel for moseq2-viz: filename=moseq2_viz-0.5.1-py3-none-any.whl size=91127 sha256=64182313405816829c43524cbe2b25d259bc2a0c3a7ed8143b376019ec9a5dcf
Stored in directory: /tmp/pip-ephem-wheel-cache-kib6rp9r/wheels/8a/79/30/43ba3e3e504278bbc2e8ba9e4cfabf34384a7e1bf4284cf08c
Building wheel for dtaidistance (setup.py) ... error

ERROR: Command errored out with exit status 1:
command: /home/volla/miniconda3/envs/moseq2-app/bin/python3.7 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-cx7hllpl/dtaidistance_b679e3d1bfab405db945021b5b34fea4/setup.py'"'"'; file='"'"'/tmp/pip-install-cx7hllpl/dtaidistance_b679e3d1bfab405db945021b5b34fea4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-xuxu8hlq
cwd: /tmp/pip-install-cx7hllpl/dtaidistance_b679e3d1bfab405db945021b5b34fea4/
Complete output (45 lines):
running bdist_wheel
Using the following environment variables:
CC=/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc
CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/volla/miniconda3/envs/moseq2-app/include
CFLAGS=
LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,-rpath,/home/volla/miniconda3/envs/moseq2-app/lib -Wl,-rpath-link,/home/volla/miniconda3/envs/moseq2-app/lib -L/home/volla/miniconda3/envs/moseq2-app/lib
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/alignment.py -> build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/clustering.py -> build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/dp.py -> build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/dtw.py -> build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/dtw_ndim.py -> build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/dtw_ndim_visualisation.py -> build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/dtw_visualisation.py -> build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/dtw_weighted.py -> build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/util.py -> build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/init.py -> build/lib.linux-x86_64-3.7/dtaidistance
running egg_info
writing dtaidistance.egg-info/PKG-INFO
writing dependency_links to dtaidistance.egg-info/dependency_links.txt
writing requirements to dtaidistance.egg-info/requires.txt
writing top-level names to dtaidistance.egg-info/top_level.txt
reading manifest file 'dtaidistance.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'dtaidistance.egg-info/SOURCES.txt'
copying dtaidistance/dtw_c.c -> build/lib.linux-x86_64-3.7/dtaidistance
copying dtaidistance/dtw_c.pyx -> build/lib.linux-x86_64-3.7/dtaidistance
running build_ext
Compiler type: unix
--noopenmp: 0
Checking for OpenMP availability
/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc -dM -E -fopenmp -stdout=-1 input= encoding=ascii
... no OpenMP
WARNING: OpenMP is not available, disabling OpenMP (no parallel computing in C)
building 'dtaidistance.dtw_c' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/dtaidistance
/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/volla/miniconda3/envs/moseq2-app/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/volla/miniconda3/envs/moseq2-app/include -fPIC -I/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/numpy/core/include -I/home/volla/miniconda3/envs/moseq2-app/include/python3.7m -c dtaidistance/dtw_c.c -o build/temp.linux-x86_64-3.7/dtaidistance/dtw_c.o
unable to execute '/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc': No such file or directory
error: command '/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc' failed with exit status 1

ERROR: Failed building wheel for dtaidistance
Running setup.py clean for dtaidistance
Building wheel for pyhsmm (setup.py) ... done
Created wheel for pyhsmm: filename=pyhsmm-0.1.6-cp37-cp37m-linux_x86_64.whl size=50609 sha256=e45bb248cdf2cfa55378595c33a13275fa7b47613dece9317056fe6b75070fd7
Stored in directory: /tmp/pip-ephem-wheel-cache-kib6rp9r/wheels/02/96/90/f177a4630edf2d01743ca9094a4653984dc2981814b0cd5844
Successfully built moseq2-app moseq2-extract moseq2-model pybasicbayes moseq2-pca moseq2-viz pyhsmm
Failed to build cytoolz autoregressive psutil dtaidistance
Installing collected packages: six, scipy, nose, matplotlib, heapdict, future, zict, tblib, sortedcontainers, pybasicbayes, psutil, msgpack, dask, click, ruamel.yaml.clib, pyhsmm, patsy, networkx, distributed, cython, tqdm, statsmodels, seaborn, scikit-learn, ruamel.yaml, retrying, pathspec, opencv-python, joblib, h5py, dtaidistance, dask-jobqueue, cytoolz, chest, bokeh, autoregressive, plotly, moseq2-viz, moseq2-pca, moseq2-model, moseq2-extract, jupyter-bokeh, moseq2-app
Attempting uninstall: six
Found existing installation: six 1.16.0
Uninstalling six-1.16.0:
Successfully uninstalled six-1.16.0
Attempting uninstall: scipy
Found existing installation: scipy 1.7.1
Uninstalling scipy-1.7.1:
Successfully uninstalled scipy-1.7.1
Attempting uninstall: matplotlib
Found existing installation: matplotlib 3.4.3
Uninstalling matplotlib-3.4.3:
Successfully uninstalled matplotlib-3.4.3
Running setup.py install for psutil ... error

ERROR: Command errored out with exit status 1:
 command: /home/volla/miniconda3/envs/moseq2-app/bin/python3.7 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-cx7hllpl/psutil_d10237e93ff44d3f9e4f7d0e815415b0/setup.py'"'"'; __file__='"'"'/tmp/pip-install-cx7hllpl/psutil_d10237e93ff44d3f9e4f7d0e815415b0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-9xubr0hg/install-record.txt --single-version-externally-managed --compile --install-headers /home/volla/miniconda3/envs/moseq2-app/include/python3.7m/psutil
     cwd: /tmp/pip-install-cx7hllpl/psutil_d10237e93ff44d3f9e4f7d0e815415b0/
Complete output (41 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/psutil
copying psutil/_common.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_compat.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_psaix.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_psbsd.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_pslinux.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_psosx.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_psposix.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_pssunos.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/_pswindows.py -> build/lib.linux-x86_64-3.7/psutil
copying psutil/__init__.py -> build/lib.linux-x86_64-3.7/psutil
creating build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/runner.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_aix.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_bsd.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_connections.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_contracts.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_linux.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_memory_leaks.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_misc.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_osx.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_posix.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_process.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_sunos.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_system.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_unicode.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/test_windows.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/__init__.py -> build/lib.linux-x86_64-3.7/psutil/tests
copying psutil/tests/__main__.py -> build/lib.linux-x86_64-3.7/psutil/tests
running build_ext
building 'psutil._psutil_linux' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/psutil
/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/volla/miniconda3/envs/moseq2-app/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/volla/miniconda3/envs/moseq2-app/include -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_VERSION=567 -DPSUTIL_LINUX=1 -DPSUTIL_ETHTOOL_MISSING_TYPES=1 -I/home/volla/miniconda3/envs/moseq2-app/include/python3.7m -c psutil/_psutil_common.c -o build/temp.linux-x86_64-3.7/psutil/_psutil_common.o
unable to execute '/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc': No such file or directory
error: command '/home/volla/miniconda3/envs/moseq2-app/bin/x86_64-conda_cos6-linux-gnu-cc' failed with exit status 1

----------------------------------------

ERROR: Command errored out with exit status 1: /home/volla/miniconda3/envs/moseq2-app/bin/python3.7 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-cx7hllpl/psutil_d10237e93ff44d3f9e4f7d0e815415b0/setup.py'"'"'; file='"'"'/tmp/pip-install-cx7hllpl/psutil_d10237e93ff44d3f9e4f7d0e815415b0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-9xubr0hg/install-record.txt --single-version-externally-managed --compile --install-headers /home/volla/miniconda3/envs/moseq2-app/include/python3.7m/psutil Check the logs for full command output.
Installing /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator -> nbextensions_configurator
Making directory: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/icon.png -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/icon.png
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/kse_components.js -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/kse_components.js
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/main.css -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/main.css
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/main.js -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/main.js
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/quickhelp_shim.js -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/quickhelp_shim.js
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/readme.md -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/readme.md
Making directory: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/config_menu
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/config_menu/config_menu.yaml -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/config_menu/config_menu.yaml
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/config_menu/icon.png -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/config_menu/icon.png
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/config_menu/main.js -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/config_menu/main.js
Making directory: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/render
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/render/render.js -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/render/render.js
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/render/rendermd.css -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/render/rendermd.css
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/render/video_play.svg -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/render/video_play.svg
Making directory: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/tree_tab
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/tree_tab/icon.png -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/tree_tab/icon.png
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/tree_tab/main.js -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/tree_tab/main.js
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/tree_tab/readme.md -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/tree_tab/readme.md
Copying: /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator/tree_tab/tree_tab.yaml -> /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/tree_tab/tree_tab.yaml

  • Validating: OK
    Installing /home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_nbextensions_configurator/static/nbextensions_configurator -> nbextensions_configurator
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/icon.png
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/kse_components.js
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/main.css
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/main.js
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/quickhelp_shim.js
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/readme.md
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/config_menu/config_menu.yaml
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/config_menu/icon.png
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/config_menu/main.js
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/render/render.js
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/render/rendermd.css
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/render/video_play.svg
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/tree_tab/icon.png
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/tree_tab/main.js
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/tree_tab/readme.md
    Up to date: /home/volla/miniconda3/envs/moseq2-app/share/jupyter/nbextensions/nbextensions_configurator/tree_tab/tree_tab.yaml

  • Validating: OK

    To initialize this nbextension in the browser every time the notebook (or other app) loads:

        jupyter nbextension enable jupyter_nbextensions_configurator --py --sys-prefix

Enabling notebook extension jupyter-js-widgets/extension...
- Validating: OK
Enabling notebook extension qgrid/extension...
- Validating: OK
Traceback (most recent call last):
File "/home/volla/miniconda3/envs/moseq2-app/bin/jupyter-nbextension", line 10, in
sys.exit(main())
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_core/application.py", line 264, in launch_instance
return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs)
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/traitlets/config/application.py", line 846, in launch_instance
app.start()
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 980, in start
super().start()
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_core/application.py", line 253, in start
self.subapp.start()
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 708, in start
self.install_extensions()
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 687, in install_extensions
**kwargs
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 203, in install_nbextension_python
m, nbexts = _get_nbextension_metadata(module)
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 1114, in _get_nbextension_metadata
m = import_item(module)
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/traitlets/utils/importstring.py", line 38, in import_item
return import(parts[0])
ModuleNotFoundError: No module named 'jupyter_bokeh'
Traceback (most recent call last):
File "/home/volla/miniconda3/envs/moseq2-app/bin/jupyter-nbextension", line 10, in
sys.exit(main())
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_core/application.py", line 264, in launch_instance
return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs)
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/traitlets/config/application.py", line 846, in launch_instance
app.start()
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 980, in start
super().start()
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/jupyter_core/application.py", line 253, in start
self.subapp.start()
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 888, in start
self.toggle_nbextension_python(self.extra_args[0])
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 864, in toggle_nbextension_python
logger=self.log)
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 475, in enable_nbextension_python
logger=logger)
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 372, in _set_nbextension_state_python
m, nbexts = _get_nbextension_metadata(module)
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/notebook/nbextensions.py", line 1114, in _get_nbextension_metadata
m = import_item(module)
File "/home/volla/miniconda3/envs/moseq2-app/lib/python3.7/site-packages/traitlets/utils/importstring.py", line 38, in import_item
return import(parts[0])
ModuleNotFoundError: No module named 'jupyter_bokeh'

Possible Solution

No idea. I tried changing the path to x86_64-conda-cos6 ... folder with a symbolic link but still got errors on the installation.

Steps to Reproduce (for bugs)

  1. I followed the instructions on Install Moseq2 on Windows using Conda to the letter. I removed the environment and the folder several times and retried, just to make sure I wasn't fooling myself. These problems seem more inveterate than earlier in the year when I tried to install on my lab system. That computer's WSL system still works and I am loath to make any changes, since there's so much difficulty getting this up and running on any other computer at this point.

Screenshots

Context

Want to be able to analyze data using a computer other than the one I am acquiring data on.

Your Environment

  • Version/GitHub branch used: release (as per instructions in the wiki); I also tried dev and safer-install, though the latter doesn't work
  • Device: Dell XPS 13 (laptop)
  • OS: Windows 10
  • Link to your project:
@espy1412 espy1412 added the bug Something isn't working label Oct 6, 2021
@versey-sherry versey-sherry mentioned this issue Oct 13, 2021
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@versey-sherry
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Thank you, we have updated our documentation. https://github.com/dattalab/moseq2-app/wiki/Install-MoSeq2-on-Windows-using-Conda

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