README.md

DDBJ Repository

C4Container

Person(user, "User")

System_Ext(accounts, "accounts.ddbj.nig.ac.jp")
System_Ext(ddbj_validator, "DDBJ Validator")

Container_Boundary(repository, "DDBJ Repository") {
    ContainerDb(schema, "API Schema", "OpenAPI")
    Container(web, "Web UI", "Ember.js")
    Container(cli, "CLI", "Deno")

    Container_Boundary(api, "API") {
        Container(proxy, "Reverse Proxy", "Varnish")
        Container(app, "Application Server", "Puma (Rails)")
        ContainerQueue(worker, "Background Job Worker", "Solid Queue")
        Container_Ext(mb_tools, "ddbj/metabobank_tools")
        ContainerDb_Ext(object_storage, "Object Storage", "MinIO")
        ContainerDb_Ext(db, "Database", "PostgreSQL")
        Container_Ext(excel2xml, "ddbj/submission-excel2xml")
        Container(noodles-gff, "noodles_gff-rb")
    }
}

Rel(user, accounts, "Logs in to")
Rel(user, proxy, "Uses for accessing API")
Rel(user, web, "Accesses Web UI")
Rel(user, cli, "Uses CLI")

Rel(web, schema, "Uses")
Rel(web, proxy, "Uses for accessing API")

Rel(cli, schema, "Uses")
Rel(cli, proxy, "Uses for accessing API")

Rel(proxy, app, "Forwards requests to")
Rel(proxy, object_storage, "Forwards requests to")

Rel(app, accounts, "Requests authorization from")
Rel(app, schema, "Uses")
Rel(app, db, "Reads from and writes to")
Rel(app, object_storage, "Reads files from")

Rel(worker, object_storage, "Writes files to")
Rel(worker, db, "Reads from and writes to")
Rel(worker, ddbj_validator, "Validates BioProject/BioSample files using")
Rel(worker, mb_tools, "Validates MetaboBank files using")
Rel(worker, excel2xml, "Validates DRA files using")
Rel(worker, noodles-gff, "Validates GFF3 files using")

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