What should we do after training?

[HelloWorldLTY]

Hello, I am Tianyu. I just tried to use my data to train a new model using embed.py. However, after I get the dl model, what is the next step for me to get the embeddings? I don't find clear steps for future work. Thanks a lot.

[ayan-iiitd]

This might help. #76 (comment)

[jayachaturvedi]

Hello Tianyu. I would like to use my own data to train a new model as well. Have you made your script available at all (how you adapted the embed.py script to train your data)?

[HelloWorldLTY]

Hello Tianyu. I would like to use my own data to train a new model as well. Have you made your script available at all (how you adapted the embed.py script to train your data)?

Hi, thanks for your contact. I think you can change the data you have as a matrix (for example, my data are single-cell RNA-seq data), and then store this matrix as .csv file. The last step is using their code to generate a graph based on your matrix.
I haven't published my code because I think it may not be a general solution to this topic.

[jayachaturvedi]

Hello Tianyu. I would like to use my own data to train a new model as well. Have you made your script available at all (how you adapted the embed.py script to train your data)?

Hi, thanks for your contact. I think you can change the data you have as a matrix (for example, my data are single-cell RNA-seq data), and then store this matrix as .csv file. The last step is using their code to generate a graph based on your matrix. I haven't published my code because I think it may not be a general solution to this topic.

Thanks Tianyu! I have tried creating my own csv file but it doesn't seem to generate the embedding, but maybe it is because I didn't change the data as a matrix. I'm assuming you mean convert it into a numeric matrix?