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Explore how to query for large regions of deletions in NCI Cancer Data stored in BigQuery #107

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DavidPotCanuck opened this issue Jul 13, 2020 · 1 comment
Open

Explore how to query for large regions of deletions in NCI Cancer Data stored in BigQuery #107

DavidPotCanuck opened this issue Jul 13, 2020 · 1 comment
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Hackathon exercise

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@DavidPotCanuck
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For the FASP Hackathon ISB-CGC Bioinformaticians will create example BigQuery queries that identify in NCI public datasets deleted regions of chromosomes. Examples will be provided of these explorations.
@DavidPotCanuck DavidPotCanuck mentioned this issue Jul 13, 2020
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@kabdilleh1
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kabdilleh1 commented Aug 18, 2020 •
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ISB-CGC team notes from our hackathon exercise here: https://docs.google.com/document/d/1wzB-SDkCVaASYQN31QSG0lgnqt4GB1dVmf4kaAwcTW8/edit
We explore various ways to query ISB-CGC BigQuery tables to identify deleted regions from open-access cancer data. Here we show examples of the sql queries.

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@ianfore @DavidPotCanuck @kabdilleh1