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Writeup of scientific use case for our work #89

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briandoconnor opened this issue Jan 6, 2020 · 5 comments
Open

Writeup of scientific use case for our work #89

briandoconnor opened this issue Jan 6, 2020 · 5 comments
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@briandoconnor
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Federated Federated Analysis Systems Project Needs Champion Priority: Medium

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@briandoconnor
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briandoconnor commented Jan 6, 2020 •
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Can we get Ann or Ian as champion?

I'm happy to help with this one too since we have use cases from the NIH Systems Interoperation working group
@briandoconnor briandoconnor added the Federated Federated Analysis Systems Project label Jan 6, 2020
@briandoconnor briandoconnor changed the title DNAstack/Google - clear writeup of scientific use case for Heidelberg demo Writeup of scientific use case for our work Apr 20, 2020
@briandoconnor briandoconnor self-assigned this Apr 24, 2020
@mbarkley
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mbarkley commented May 4, 2020

May 4, 2020 update: conversations have been started on goals. Discussion was good for generating ideas. Want to structure these ideas as a next step.

@ianfore
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ianfore commented Jun 1, 2020

Willing to participate as champion, but mainly in helping identify use cases for the sources it makes sense to combine/federate. That would still need follow through on meaningful scientific questions from the combined data. Ann?

@briandoconnor
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Sounds good @ianfore . I'm happy to help bring the NCPI (https://docs.google.com/document/d/1DvAMKYG5kPds7PG2uzTreY86MY80yB1rCdb5wnaye-I/edit) use cases to the table for FASP

@ianfore
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ianfore commented Jun 1, 2020

Can double team on the NCPI use cases - part of what I'm including under the banner of sources to federate.

@mattions
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mattions commented Jun 3, 2020

I've announced on the FASP call last Monday that we are going to develop a Golden Demo.
The main goal will be:
TOPMed data on BioDataCatalyst and Kids First Data on Cavatica.

A way to perform computation on these using GA4GH API stack.

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@mattions @briandoconnor @mbarkley @ianfore