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NEWS.md

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dseqr 0.22.0

  • initialize import and export of R objects

dseqr 0.20.0

  • switch to picker for grid plots

dseqr 0.19.0

  • switch to picker for scatter plots
  • add support for .h5 uploads

dseqr 0.16.0

  • updated scDblFinder to 1.7.4
  • improved upload modal
  • support for all ensembl species
  • switch to HDF5Array::TENxMatrix for fast gene exploration without loading time
  • see convert script to update data generated with [v0.15.0-0.16.0)

dseqr 0.15.0

  • Added human_lung reference from azimuth
  • can zoom plots with brush and double-click
  • gene table has filter for each column
  • see convert script to update data generated with [v0.14.1-0.15.0)

dseqr 0.14.18

  • pathway analysis is faster and GO terms are clustered

dseqr 0.14.1

  • can delete single-cell datasets
  • improved upload interface
  • added cluster-free differential expression plot
  • uses dgRMatrix for faster access to logcounts
  • see convert script to update data generated with v[0.14.0-0.14.1)

dseqr 0.14.0

  • logcounts and SingleCellExperiment are saved separately for initial load speed
  • see convert script to update data generated with v[0.13.3-0.14.0)

dseqr 0.13.3

  • control and test sample can be changed through UI
  • added cluster-free differential abundance plot
  • see convert script to update data generated with v[0.13.1-0.13.3)

dseqr 0.13.1

  • Restored 1v1 cluster comparisons now using AUC and percent differences.

dseqr 0.13.0

  • Added a NEWS.md file to track changes to the package.
  • Removed LoomExperiment in favor of qs::qsave(..., preset = 'fast')
  • Uses presto to calculate markers for speed.
  • Implements flexible integrated group specification/comparison.
  • Uses scDblFinder for detecting doublets.
  • Uses UMAP for larger datasets (>5000 cells).
  • see convert script to update data generated with v[0.10.0-0.13.0)