From 6925d27254bd6e2e8bb740457b0ce2cfc7087d5e Mon Sep 17 00:00:00 2001 From: Blake Caldwell Date: Tue, 30 Mar 2021 12:11:13 -0400 Subject: [PATCH] DOC: have users install hnn-core master branch --- installer/centos/hnn-centos6.sh | 2 +- installer/docker/Dockerfile | 2 +- installer/mac/README.md | 2 +- installer/ubuntu/README.md | 2 +- installer/ubuntu/hnn-ubuntu.sh | 4 ++-- scripts/setup-travis-osx.sh | 2 +- 6 files changed, 7 insertions(+), 7 deletions(-) diff --git a/installer/centos/hnn-centos6.sh b/installer/centos/hnn-centos6.sh index 16ad5867..034c5b49 100644 --- a/installer/centos/hnn-centos6.sh +++ b/installer/centos/hnn-centos6.sh @@ -16,7 +16,7 @@ sudo yum -y install python34-setuptools sudo easy_install-3.4 pip pip3 install --upgrade matplotlib --user pip3 install --upgrade nlopt scipy --user -pip3 install hnn-core +pip3 install https://api.github.com/repos/jonescompneurolab/hnn-core/zipball/master sudo yum -y install ncurses-devel sudo yum -y install openmpi openmpi-devel sudo yum -y install libXext libXext-devel diff --git a/installer/docker/Dockerfile b/installer/docker/Dockerfile index f417f381..a3552ec3 100644 --- a/installer/docker/Dockerfile +++ b/installer/docker/Dockerfile @@ -84,7 +84,7 @@ LABEL org.label-schema.build-date=$BUILD_DATE \ org.label-schema.schema-version=$VCS_TAG # install hnn-core -RUN sudo pip install hnn-core +RUN sudo pip install https://api.github.com/repos/jonescompneurolab/hnn-core/zipball/master # install HNN RUN sudo apt-get update && \ diff --git a/installer/mac/README.md b/installer/mac/README.md index fb8863e1..24611e74 100644 --- a/installer/mac/README.md +++ b/installer/mac/README.md @@ -51,7 +51,7 @@ The Xcode Command Line Tools package includes utilities for compiling code from ```bash conda activate hnn - pip install hnn-core + pip install https://api.github.com/repos/jonescompneurolab/hnn-core/zipball/master pip install nlopt pip install mpi4py ``` diff --git a/installer/ubuntu/README.md b/installer/ubuntu/README.md index 611942c1..d3a38ce6 100644 --- a/installer/ubuntu/README.md +++ b/installer/ubuntu/README.md @@ -23,7 +23,7 @@ ```bash conda activate hnn - pip install hnn-core + pip install https://api.github.com/repos/jonescompneurolab/hnn-core/zipball/master pip install nlopt pip install mpi4py ``` diff --git a/installer/ubuntu/hnn-ubuntu.sh b/installer/ubuntu/hnn-ubuntu.sh index 21875eb7..151f23a8 100755 --- a/installer/ubuntu/hnn-ubuntu.sh +++ b/installer/ubuntu/hnn-ubuntu.sh @@ -106,7 +106,7 @@ if [[ "$USE_CONDA" -eq 0 ]]; then # install hnn-core and prerequisites (e.g. NEURON) echo "Installing python prequisites for HNN with pip..." | tee -a "$LOGFILE" - $PIP install --no-cache-dir pyqt5 nlopt psutil hnn-core &> "$LOGFILE" + $PIP install --no-cache-dir pyqt5 nlopt psutil https://api.github.com/repos/jonescompneurolab/hnn-core/zipball/master &> "$LOGFILE" # WSL may not have nrnivmodl in PATH if ! which nrnivmodl &> /dev/null; then @@ -134,7 +134,7 @@ else libopenmpi-dev &> "$LOGFILE" # install hnn-core and prerequisites (e.g. NEURON) - pip install hnn-core mpi4py nlopt + pip install https://api.github.com/repos/jonescompneurolab/hnn-core/zipball/master mpi4py nlopt fi echo "Downloading runtime prerequisite packages..." | tee -a "$LOGFILE" diff --git a/scripts/setup-travis-osx.sh b/scripts/setup-travis-osx.sh index b4cd4bb1..92b1b322 100755 --- a/scripts/setup-travis-osx.sh +++ b/scripts/setup-travis-osx.sh @@ -19,4 +19,4 @@ conda env create -f environment.yml conda install -y -n hnn openmpi mpi4py conda activate hnn -pip install hnn-core nlopt \ No newline at end of file +pip install https://api.github.com/repos/jonescompneurolab/hnn-core/zipball/master nlopt \ No newline at end of file