slurm-27453790.out

/ufrc/djlemas/jtkim1/Sarek-jt
c21a-s8.ufhpc
Sat Nov  3 18:09:12 EDT 2018
Running nextflow script on HiPerGator
N E X T F L O W  ~  version 0.32.0
Launching `buildReferences.nf` [big_darwin] - revision: ad9e9ed815
WARN: The config file defines settings for an unknown process: ConcatVCF
    ____        _____               _    
  .' _  `.     / ____|             | |   
 /  |\`-_ \   | (___  ___  _ __ __ | | __
|   | \  `-|   \___ \/__ \| ´__/ _\| |/ /
 \ |   \  /    ____) | __ | | |  __|   < 
  `|____\'    |_____/\____|_|  \__/|_|\_\
Sarek - Workflow For Somatic And Germline Variations ~ 2.2.1 - ad9e9ed815
Command Line: nextflow run buildReferences.nf --outDir References/smallGRCh37 --refDir Sarek-data/reference --genome smallGRCh37 --genome_base References/smallGRCh37 --tag latest -profile singularityslurm
Project Dir : /ufrc/djlemas/jtkim1/Sarek-jt
Launch Dir  : /ufrc/djlemas/jtkim1/Sarek-jt
Work Dir    : /ufrc/djlemas/jtkim1/Sarek-jt/work
Out Dir     : References/smallGRCh37
Genome      : smallGRCh37
Containers
  Repository   : docker://jongtaek
  Tag          : latest
[warm up] executor > slurm
[29/ba6945] Submitted process > DecompressFile (human_g1k_v37_decoy.small.fasta.gz)
[f3/9a747d] Submitted process > DecompressFile (dbsnp_138.b37.small.vcf.gz)
[ed/510873] Submitted process > DecompressFile (b37_cosmic_v74.noCHR.sort.4.1.small.vcf.gz)
[bb/4e3605] Submitted process > DecompressFile (b37_cosmic_v54_120711.small.vcf.gz)
[06/4a9194] Submitted process > DecompressFile (1000G_phase1.indels.b37.small.vcf.gz)
[3a/eadcf7] Submitted process > DecompressFile (Mills_and_1000G_gold_standard.indels.b37.small.vcf.gz)
slurmstepd: error: *** JOB 27453790 ON c21a-s8 CANCELLED AT 2018-11-03T18:15:20 ***