remove python 3.10, try lxml hotfix

ktmeaton · Jan 13, 2022 · 9087056 · 9087056
1 parent f892e9b
commit 9087056
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Showing 5 changed files with 18 additions and 14 deletions.
diff --git a/.github/workflows/build.yaml b/.github/workflows/build.yaml
@@ -30,7 +30,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: [3.7, 3.8, 3.9, "3.10.1"]
+        python-version: [3.7, 3.8, 3.9]
 
     steps:
       - name: Checkout Repository
@@ -54,7 +54,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: [3.7, 3.8, 3.9, "3.10.1"]
+        python-version: [3.7, 3.8, 3.9]
 
     steps:
       - name: Checkout Repository
@@ -79,7 +79,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: [3.7, 3.8, 3.9, "3.10.1"]
+        python-version: [3.7, 3.8, 3.9]
 
     steps:
       - name: Checkout Repository

diff --git a/.github/workflows/example.yaml b/.github/workflows/example.yaml
@@ -29,7 +29,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: [3.7, 3.8, 3.9, "3.10.1"]
+        python-version: [3.7, 3.8, 3.9]
     steps:
 
       - name: Checkout Repository
@@ -62,7 +62,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: [3.7, 3.8, 3.9, "3.10"]
+        python-version: [3.7, 3.8, 3.9]
 
     steps:
       - name: Checkout Repository
@@ -96,7 +96,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: [3.7, 3.8, 3.9, "3.10.1"]
+        python-version: [3.7, 3.8, 3.9]
 
     steps:
       - name: Checkout Repository
@@ -117,6 +117,13 @@ jobs:
           conda activate ncbimeta
           NCBImeta --version
 
+      - name: lxml Hotfix
+        shell: bash -l {0}
+        run: |
+          conda activate ncbimeta
+          pip uninstall lxml
+          pip install lxml
+
       - name: Quick Start Example
         shell: bash -l {0}
         run: |

diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml
@@ -28,7 +28,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: [3.7, 3.8, 3.9, "3.10.1"]
+        python-version: [3.7, 3.8, 3.9]
 
     steps:
 

diff --git a/environment.yaml b/environment.yaml
@@ -5,10 +5,7 @@ channels:
   - anaconda
   - defaults
 dependencies:
-  - python=3.8
+  - python>=3.7,<3.10
   - pip
-  - anaconda::make
-  - anaconda::gcc_impl_linux-64
-  - anaconda::gcc_linux-64
-  - anaconda::gxx_linux-64
-  - ncbimeta
+  - pip:
+    - ncbimeta
diff --git a/setup.py b/setup.py
@@ -13,7 +13,7 @@
         "Efficient and comprehensive metadata acquisition "
         "from the NCBI databases (includes SRA)."
     ),
-    python_requires=">=3.7,<=3.10.1",
+    python_requires=">=3.7,<3.10",
     license="MIT",
     long_description=long_description,
     long_description_content_type="text/markdown",