fix missing conda activate

ktmeaton · Jan 13, 2022 · de731fe · de731fe
1 parent 6d3e91f
commit de731fe
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/.github/workflows/example.yaml b/.github/workflows/example.yaml
@@ -117,7 +117,9 @@ jobs:
           NCBImeta --version
 
       - name: Quick Start Example
+        shell: bash -l {0}
         run: |
+          conda activate ncbimeta
           NCBImeta --flat --config test/test.yaml --force-pause-seconds 0 --email ${{ secrets.NCBI_EMAIL }} --api ${{ secrets.NCBI_API_KEY }}
           NCBImetaAnnotate --database test/test.sqlite --annotfile test/test_annot.txt --table BioSample
           NCBImetaAnnotate --database test/test.sqlite --annotfile test/test_annot.txt --table BioSample --concatenate