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dot_emacs
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dot_emacs
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;;; package -- Summary
;;;
;;; Commentary:
;;;
;;; Written by Marc Henry de Frahan
;;;
;;; Required externals:
;;; - aspell or hunspell
;;; - emms-print-metadata
;;; - global
;;; - clang/llvm
;;; - ccls
;;; - mp3info
;;; - mpv
;;; - pianobar
;;; - shellcheck
;;; - vlc
;;; - vorbis-tools
;;;
;;; Code:
;;================================================================================
;;
;; Set up
;;
;;================================================================================
(setq custom-file (concat user-emacs-directory "custom.el"))
(when (file-exists-p custom-file)
(load custom-file 'noerror))
(setq inhibit-startup-screen t)
(setq kill-ring-max 200)
(setq user-full-name "Marc Henry de Frahan")
(set-face-attribute 'default nil :height 110)
;; never tabs
(setq-default indent-tabs-mode nil)
;; syntax color
(global-font-lock-mode t)
;; For accents. To toggle: C-\
(setq default-input-method "latin-1-prefix")
;;Turn alarm completely off
(setq ring-bell-function 'ignore )
;; Never follow symlinks (don't prompt to ask). This allows me to keep
;; the syntax coloring when editing a symlinked file (useful for the
;; dotfiles thing)
(setq vc-follow-symlinks nil)
;; Backup. A lot.
(setq backup-directory-alist '(("." . "~/.emacs.d/backups")))
(setq delete-old-versions -1)
(setq version-control t)
(setq vc-make-backup-files t)
(setq auto-save-file-name-transforms '((".*" "~/.emacs.d/auto-save-list/" t)))
;; Change "yes or no" to "y or n"
(fset 'yes-or-no-p 'y-or-n-p)
;; warn when opening files bigger than 200MB
(setq large-file-warning-threshold 200000000)
;; silence warnings from native-comp
(setq native-comp-async-report-warnings-errors 'silent)
;;================================================================================
;;
;; Package management
;;
;;================================================================================
;; Enable the MELPA package repo (http://melpa.org/#/getting-started)
(require 'package)
(setq package-enable-at-startup nil)
(add-to-list 'package-archives
'("melpa" . "https://melpa.org/packages/"))
(package-initialize)
;; Bootstrap `use-package'
(unless (package-installed-p 'use-package)
(package-refresh-contents)
(package-install 'use-package))
(eval-when-compile
(require 'use-package))
;;================================================================================
;;
;; recentf
;;
;;================================================================================
(use-package recentf
:config
(recentf-mode 1))
;;================================================================================
;;
;; Code completion
;;
;;================================================================================
(use-package yasnippet
:ensure t
:hook ((prog-mode . yas-minor-mode)))
(use-package company
:ensure t
:bind
;;("M-[" . company-complete-common)
:config
(use-package company-shell
:ensure t)
(setq company-show-numbers t
company-backends '((company-shell company-shell-env company-capf)))
(global-company-mode))
;;================================================================================
;;
;; LSP
;;
;;================================================================================
(use-package lsp-mode
:ensure t
:commands lsp
:hook ((c-mode c++-mode objc-mode python-mode bash-mode sh-mode) . lsp)
:bind
("C-c i" . lsp-format-region)
("C-c u" . lsp-format-buffer)
("C-c f d" . lsp-find-definition)
("C-c f r" . lsp-find-references)
("C-c f p" . xref-pop-marker-stack)
:config
(setq lsp-pyls-plugins-autopep8-enabled nil)
(setq lsp-pyls-plugins-yapf-enabled nil)
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]plt.+\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]chk.+\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]Submodules\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]Docs\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]submods\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]build\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]Build\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]AMR-WindGoldFiles\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]test_files\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]PeleCGoldFiles\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]tmp_build_dir\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]spack-build-.+\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\].spack-env\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\].cache\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/.tmp\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/configs\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/docs\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/env-templates\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/golds\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/repos\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/scripts\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/spack\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/spack-manager\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/spack-scripting\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/stage\\'")
(add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]exawind-manager/tests\\'")
;; Increase garbage collection threshold
;; https://emacs-lsp.github.io/lsp-mode/page/performance/
;; https://bling.github.io/blog/2016/01/18/why-are-you-changing-gc-cons-threshold/
(setq gc-cons-threshold 100000000)
(defun my-minibuffer-setup-hook ()
(setq gc-cons-threshold most-positive-fixnum))
(defun my-minibuffer-exit-hook ()
(setq gc-cons-threshold 100000000))
(add-hook 'minibuffer-setup-hook #'my-minibuffer-setup-hook)
(add-hook 'minibuffer-exit-hook #'my-minibuffer-exit-hook)
;; Increase the amount of data which Emacs reads from the process
(setq read-process-output-max (* 1024 1024)) ;; 1mb
(use-package lsp-ui
:ensure t
:after (lsp-mode)
:hook (lsp-mode . lsp-ui-mode)
:bind
("C-c f u" . lsp-ui-imenu)
("C-c f D" . lsp-ui-peek-find-definitions)
("C-c f R" . lsp-ui-peek-find-references)
([remap xref-find-definitions] . lsp-ui-peek-find-definitions)
([remap xref-find-references] . lsp-ui-peek-find-references)
:config
(setq lsp-ui-flycheck-enable t))
;; Servers
;; ccls is in homebrew, to compile from source do:
;; $ git clone --depth=1 --recursive https://github.com/MaskRay/ccls
;; $ cd ccls
;; $ cmake -H. -BRelease -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=/usr/local/opt/llvm -DCMAKE_CXX_COMPILER=/usr/local/opt/llvm/bin/clang++
;; $ VERBOSE=1 cmake --build Release
(use-package ccls
:ensure t
:after (lsp-mode)
:bind
("C-c f m" . ccls-member-hierarchy)
("C-c f i" . ccls-inheritance-hierarchy)
:hook ((c-mode c++-mode objc-mode) .
(lambda () (require 'ccls) (lsp))))
(setq lsp-prefer-flymake nil)
(setq lsp-file-watch-threshold 2000))
(use-package dap-mode
:ensure t
:after lsp-mode
:functions dap-hydra/nil
:config
(dap-register-debug-template
"LLDB::PeleG"
(list :type "lldb"
:cwd "/Users/mhenryde/combustion/Pele/PeleG/MyBuild"
:request "launch"
:program "pelec"
:args ["input-3d"]
:name "LLDB::PeleG"))
:hook ((after-init . dap-mode)
(dap-mode . dap-ui-mode)
(dap-mode . dap-tooltip-mode)
(dap-session-created . (lambda (_args) (dap-hydra)))
(dap-stopped . (lambda (_args) (dap-hydra)))
(dap-terminated . (lambda (&_rest) (dap-hydra/nil)))
((c-mode c++-mode objc-mode) . (lambda () (require 'dap-lldb)))))
;;================================================================================
;;
;; Syntax checking
;;
;;================================================================================
(use-package flycheck
:ensure t
:init
(global-flycheck-mode)
:config
(setq flycheck-python-flake8-executable "flake8"))
;; ;;================================================================================
;; ;;
;; ;; treesit
;; ;;
;; ;;================================================================================
;; (use-package treesit
;; :if (treesit-available-p)
;; :defer t
;; :init
;; (setq treesit-language-source-alist
;; '((bash . ("https://github.com/tree-sitter/tree-sitter-bash"))
;; (c . ("https://github.com/tree-sitter/tree-sitter-c"))
;; (cmake . ("https://github.com/uyha/tree-sitter-cmake"))
;; (cpp . ("https://github.com/tree-sitter/tree-sitter-cpp"))
;; (json . ("https://github.com/tree-sitter/tree-sitter-json"))
;; (julia . ("https://github.com/tree-sitter/tree-sitter-julia"))
;; (markdown . ("https://github.com/ikatyang/tree-sitter-markdown"))
;; (python . ("https://github.com/tree-sitter/tree-sitter-python"))
;; (toml . ("https://github.com/tree-sitter/tree-sitter-toml"))
;; (yaml . ("https://github.com/ikatyang/tree-sitter-yaml"))))
;; :config
;; (setq major-mode-remap-alist
;; '((bash-mode . bash-ts-mode)
;; (sh-mode . bash-ts-mode)
;; (c++-mode . c++-ts-mode)
;; (cmake-mode . cmake-ts-mode)
;; (python-mode . python-ts-mode)
;; (conf-toml-mode . toml-ts-mode)
;; (yaml-mode . yaml-ts-mode)))
;; (defun treesit-install-all-language-grammars ()
;; "Install all languages specified by `treesit-language-source-alist'."
;; (interactive)
;; (let ((languages (mapcar 'car treesit-language-source-alist)))
;; (dolist (lang languages)
;; (treesit-install-language-grammar lang)
;; (message "`%s' parser was installed." lang)
;; (sit-for 0.75)))))
;;================================================================================
;;
;; Projectile
;;
;;================================================================================
(use-package projectile
:ensure t
:bind
("C-c p a" . projectile-find-other-file)
("C-c p p" . projectile-switch-project)
("C-c p f" . projectile-find-file)
("C-c p d" . projectile-find-dir)
("C-c p b" . projectile-switch-to-buffer)
("C-c p e" . projectile-recentf)
:config
(setq projectile-globally-ignored-files
(append projectile-globally-ignored-files
'(".DS_Store" ".dir-locals.el" ".pyc"))
projectile-globally-ignored-directories
(append projectile-globally-ignored-directories
'("build" "__pycache__" "Build"))
projectile-enable-caching t
projectile-completion-system 'default)
(projectile-mode))
;;================================================================================
;;
;; Vertico
;;
;;================================================================================
(use-package vertico
:ensure t
:init
(vertico-mode)
:custom
(vertico-cycle t))
(use-package vertico-directory
:after vertico
:ensure nil
;; More convenient directory navigation commands
:bind (:map vertico-map
("RET" . vertico-directory-enter)
("DEL" . vertico-directory-delete-char)
("<right>" . vertico-directory-enter)
("<left>" . vertico-directory-delete-char)
("M-DEL" . vertico-directory-delete-word))
;; Tidy shadowed file names
:hook (rfn-eshadow-update-overlay . vertico-directory-tidy))
(use-package vertico-quick
:after vertico
:ensure nil
:bind (:map vertico-map
("C-i" . vertico-quick-insert)
("C-o" . vertico-quick-exit)))
;;================================================================================
;;
;; Orderless
;;
;;================================================================================
(use-package orderless
:ensure t
:init
(setq completion-styles '(orderless basic)
completion-category-defaults nil
completion-category-overrides '((file (styles partial-completion)))))
;;================================================================================
;;
;; savehist
;;
;;================================================================================
;; Persist history over Emacs restarts.
(use-package savehist
:init
(savehist-mode))
;;================================================================================
;;
;; Consult
;;
;;================================================================================
(use-package consult
:bind
(("C-c h" . consult-history)
("C-x b" . consult-buffer)
("M-g g" . consult-goto-line)
("M-g M-g" . consult-goto-line)
("C-c g" . consult-git-grep)
("C-c s" . consult-git-grep-symbol-at-point)
("C-s" . consult-line-symbol-at-point)
("C-r" . consult-line-symbol-at-point))
:config
(defun consult-line-symbol-at-point ()
"Use symbol at point for consult-line."
(interactive)
(consult-line (thing-at-point 'symbol)))
(defun consult-git-grep-symbol-at-point ()
"Use symbol at point for consult-git-grep."
(interactive)
(require 'project)
(consult-git-grep (project-root (project-current)) (thing-at-point 'symbol))))
(use-package consult-company
:ensure t
:after (consult company)
:config
(define-key company-mode-map [remap completion-at-point] #'consult-company))
(use-package consult-lsp
:ensure t
:after (consult lsp))
(use-package consult-projectile
:ensure t
:after (consult projectile)
:bind
("C-c p h" . consult-projectile)
([remap projectile-switch-project] . consult-projectile-switch-project)
([remap projectile-find-file] . consult-projectile-find-file)
([remap projectile-find-dir] . consult-projectile-find-dir)
([remap projectile-switch-to-buffer] . consult-projectile-switch-to-buffer)
([remap projectile-recentf] . consult-projectile-recentf))
;;================================================================================
;;
;; Embark
;;
;;================================================================================
(use-package embark
:ensure t
:after consult
:bind
(("M-." . embark-act)
("M-," . embark-dwim)
:map embark-general-map
("C-s" . consult-line)
("C-c g" . embark-consult-git-grep))
:custom
(embark-help-key "?")
:init
;; Optionally replace the key help with a completing-read interface
(setq prefix-help-command #'embark-prefix-help-command)
:config
(defun embark-consult-git-grep (target)
"Use consult-git-grep on target."
(consult-git-grep nil target))
;; Hide the mode line of the Embark live/completions buffers
(add-to-list 'display-buffer-alist
'("\\`\\*Embark Collect \\(Live\\|Completions\\)\\*"
nil
(window-parameters (mode-line-format . none)))))
(use-package embark-consult
:ensure t
:after (embark consult)
:demand t
:hook
(embark-collect-mode . consult-preview-at-point-mode))
;;================================================================================
;;
;; Enable richer annotations using the Marginalia package
;;
;;================================================================================
(use-package marginalia
:ensure t
:init
(marginalia-mode))
;;================================================================================
;;
;; Moving around with avy
;;
;;================================================================================
(use-package avy
:ensure t
:bind
("M-;" . avy-goto-char-timer)
("M-j" . hydra-avy/body)
:config
(defhydra hydra-avy (:exit t :hint nil)
"
Line^^ Region^^ Goto
----------------------------------------------------------
[_y_] yank [_Y_] yank [_c_] timed char
[_m_] move [_M_] move [_w_] word
[_k_] kill [_K_] kill [_l_] line [_L_] end of line"
("c" avy-goto-char-timer)
("w" avy-goto-word-1)
("l" avy-goto-line)
("L" avy-goto-end-of-line)
("m" avy-move-line)
("M" avy-move-region)
("k" avy-kill-whole-line)
("K" avy-kill-region)
("y" avy-copy-line)
("Y" avy-copy-region)))
;;================================================================================
;;
;; Navigating windows with ace-window
;;
;;================================================================================
(use-package ace-window
:ensure t
:bind ("M-o" . ace-window)
:config
(setq aw-keys '(?a ?s ?d ?f ?g ?h ?j ?k ?l)))
;;================================================================================
;;
;; Wgrep
;;
;;================================================================================
(use-package wgrep
:ensure t)
;;================================================================================
;;
;; Kill current buffer, but ask to save, but only if it has been modified
;;
;;================================================================================
;; Based on
;; http://ergoemacs.org/emacs/elisp_close_buffer_open_last_closed.html
;; and
;; http://stackoverflow.com/questions/2357881/emacs-cant-get-buffer-offer-save-working
(defun kill-this-buffer-volatile ()
"Kill current buffer, even if it has been modified. But ask to save first."
(interactive)
(if (buffer-modified-p)
(if (y-or-n-p (format "Buffer %s modified; Do you want to save? " (buffer-name)))
(save-buffer)))
(kill-this-buffer))
;; set the hotkey
(global-set-key (kbd "C-x C-k") 'kill-this-buffer-volatile)
;;================================================================================
;;
;; C/C++
;;
;;================================================================================
(use-package cc-mode
:mode
("\\.geo" . c++-mode) ;; Gmsh files
("\\.cu$" . c++-mode) ;; CUDA files
("\\.C$" . c++-mode)
("\\.H$" . c++-mode)
:bind
("C-M-l" . forloop)
("C-M-p" . printf-binding)
:after (projectile)
:config
(use-package modern-cpp-font-lock
:ensure t
:hook (c++-mode . modern-c++-font-lock-mode))
(c-add-style "my-cpp-style"
'("stroustrup"
(c-offsets-alist
(innamespace . 0)
(inline-open . 0)
(arglist-close . 0))))
(defun my-cpp-mode-hook ()
(add-to-list 'projectile-other-file-alist
'("C" "H" "hpp" "hxx"))
(add-to-list 'projectile-other-file-alist
'("H" "cpp"))
(c-set-style "my-cpp-style")
(setq c-basic-offset 2))
(add-hook 'c++-mode-hook 'my-cpp-mode-hook)
(defun printf-binding (out vars)
"Binding for printf to make things easier. OUT is the output string and VARS is the variables to printf."
(interactive "MOutput:\nMVariables:")
(let ((beg (point)))
(insert "printf(\"" out "\\n\"," vars ");")
(indent-region beg (point))))
(defun forloop (i imax)
"Build a C/C++ for loop given I and IMAX."
(interactive "Miterator:\nMmax:")
(let ((beg (point)))
(insert "for(int " i "=0; " i "<" imax "; " i "++){\n\n}")
(indent-region beg (point))
(forward-line -1)
(c-indent-command))))
;;================================================================================
;;
;; Clang formatting
;;
;;================================================================================
(use-package clang-format
:ensure t)
;;================================================================================
;;
;; Fortran
;;
;;================================================================================
(use-package fortran
:init
;; Make Fortran indent at the level of the code. Not a fixed width.
(add-hook 'f90-mode-hook
(lambda ()
(setq fortran-comment-indent-style 'relative))))
;;================================================================================
;;
;; Matlab
;;
;;================================================================================
(use-package matlab
:ensure matlab-mode)
;;================================================================================
;;
;; Latex
;;
;;================================================================================
(use-package latex
:ensure auctex
:mode
("\\.tex\\'" . latex-mode)
:commands (latex-mode LaTeX-mode plain-tex-mode)
:bind
("C-c %" . replace-newlines-with-percent-in-region)
("M-F" . insert-figure-reference)
("M-E" . insert-equation-reference)
("M-T" . insert-table-reference)
("M-H" . insert-chapter-reference)
("M-G" . insert-appendix-reference)
("M-L (" . insert-left-right-paren)
("M-L {" . insert-left-right-brace)
("M-L [" . insert-left-right-bracket)
:config
(add-to-list 'TeX-command-list
'("Make" "make" TeX-run-compile nil t
:help "Compile with Makefile"))
;; function to replace all \n with %\n in a region. Useful for latex
;; when you are in the minipage environment.
(defun replace-newlines-with-percent-in-region ()
"Replace newlines with %\n in region."
(interactive)
(save-restriction
(narrow-to-region (point) (mark))
(goto-char (point-min))
(while (search-forward "\n" nil t) (replace-match "%\n" nil t))))
(defun insert-figure-reference ()
"Insert a figure reference for LaTex."
(interactive)
(insert "Figure\\,\\ref{fig:}") (backward-char 1))
(defun insert-equation-reference ()
"Insert an equation reference for LaTex."
(interactive)
(insert "Equation\\,(\\ref{eq:})") (backward-char 2))
(defun insert-table-reference ()
"Insert a table reference for LaTex."
(interactive)
(insert "Table\\,\\ref{tab:}") (backward-char 1))
(defun insert-chapter-reference ()
"Insert a chapter reference for LaTex."
(interactive)
(insert "Chapter\\,\\ref{chap:}") (backward-char 1))
(defun insert-appendix-reference ()
"Insert an appendix reference for LaTex."
(interactive)
(insert "Appendix\\,\\ref{app:}") (backward-char 1))
(defun insert-left-right-paren ()
"Insert a left right paren for LaTex math mode."
(interactive)
(insert "\\left( \\right)") (backward-char 8))
(defun insert-left-right-brace ()
"Insert a left right brace for LaTex math mode."
(interactive)
(insert "\\left\\{ \\right\\}") (backward-char 9))
(defun insert-left-right-bracket ()
"Insert a left right bracket for LaTex math mode."
(interactive)
(insert "\\left[ \\right]") (backward-char 8))
(setq TeX-auto-save t
TeX-newline-function 'reindent-then-newline-and-indent
TeX-parse-self t))
(use-package bibtex
:ensure t
:mode ("\\.bib" . bibtex-mode))
;;================================================================================
;;
;; Dictionary stuff
;;
;;================================================================================
(use-package ispell
:ensure t
:config
(cond
((executable-find "hunspell")
(setenv
"DICPATH"
(concat (getenv "HOME") "/.local/share/hunspell/dicts"))
(setq ispell-program-name "hunspell")
(setq ispell-extra-args '("-d en_US")))
(executable-find "aspell")
(setq ispell-program-name "aspell")
(setq ispell-extra-args '("--sug-mode=ultra"
"--lang=en_US")))
;; Switch dictionaries
(defun fd-switch-dictionary()
"Binding to switch between dictionaries."
(interactive)
(let* ((dic ispell-current-dictionary)
(change (if (string= dic "francais") "en_US" "francais")))
(ispell-change-dictionary change)
(message "Dictionary switched from %s to %s" dic change)
))
(use-package flyspell
:ensure t
:config
(use-package flyspell-correct
:ensure t
:bind
;;("C-c s" . 'flyspell-correct-previous-word-generic)
)
;; No spell check for embedded snippets in org-mode
;; From http://emacs.stackexchange.com/questions/9333/how-does-one-use-flyspell-in-org-buffers-without-flyspell-triggering-on-tangled/9347#9347
(defadvice org-mode-flyspell-verify (after org-mode-flyspell-verify-hack activate)
(let ((rlt ad-return-value)
(begin-regexp "^[ \t]*#\\+begin_\\(src\\|html\\|latex\\)")
(end-regexp "^[ \t]*#\\+end_\\(src\\|html\\|latex\\)")
old-flag
b e)
(when ad-return-value
(save-excursion
(setq old-flag case-fold-search)
(setq case-fold-search t)
(setq b (re-search-backward begin-regexp nil t))
(if b (setq e (re-search-forward end-regexp nil t)))
(setq case-fold-search old-flag))
(if (and b e (< (point) e)) (setq rlt nil)))
(setq ad-return-value rlt)))
;; No spell check for code snippets in Markdown
(defun flyspell-generic-textmode-verify ()
"Used for `flyspell-generic-check-word-predicate' in text modes."
;; (point) is next char after the word. Must check one char before.
(let ((f (get-text-property (- (point) 1) 'face)))
(not (memq f '(markdown-pre-face)))))
(setq flyspell-generic-check-word-predicate 'flyspell-generic-textmode-verify)
(add-hook 'text-mode-hook #'flyspell-mode)
(add-hook 'org-mode-hook #'flyspell-mode)
(add-hook 'latex-mode-hook #'flyspell-mode)
(add-hook 'tex-mode-hook #'flyspell-mode)
(add-hook 'prog-mode-hook #'flyspell-prog-mode)))
;;================================================================================
;;
;; Color theme
;;
;;================================================================================
(use-package reverse-theme
:ensure t)
(use-package zenburn-theme
:ensure t
:init
(load-theme 'zenburn t))
;;================================================================================
;;
;; Mode line
;;
;;================================================================================
(use-package minions
:ensure t
:config
(minions-mode 1))
(use-package doom-modeline
:ensure t
:config
(doom-modeline-mode 1)
(setq doom-modeline-minor-modes t))
;;================================================================================
;;
;; Anzu
;;
;;================================================================================
(use-package anzu
:ensure t
:bind
("M-%" . anzu-query-replace)
:config
(global-anzu-mode 1))
;;================================================================================
;;
;; Icons
;;
;;================================================================================
(use-package all-the-icons
:ensure t
:if (display-graphic-p))
(use-package all-the-icons-completion
:ensure t
:after all-the-icons
:if (display-graphic-p)
:config
(all-the-icons-completion-mode))
;;================================================================================
;;
;; OSX specific
;;
;;================================================================================
(if (eq system-type 'darwin)
(when (display-graphic-p)
(setq mac-command-modifier 'control)))
;;================================================================================
;;
;; Shell editing
;;
;;================================================================================
(use-package sh-script
:mode
("\\.zsh" . sh-mode)
("\\.pbs" . sh-mode))
;;================================================================================
;;
;; Word counting
;;
;;================================================================================
(use-package wc-mode
:ensure t
:bind
("\C-cw" . wc-mode))
;;================================================================================
;;
;; Org-mode
;;
;;================================================================================
(use-package org
:ensure t
:bind
("C-c a" . org-agenda)
:init
(setq org-startup-truncated nil)
(setq org-log-done 'note)
(setq org-lowest-priority ?E)
(setq org-agenda-files '("~/org/work.org" "~/org/di.org")))
;;================================================================================
;;
;; ESS
;;
;;================================================================================
(use-package ess-site
:ensure ess
:mode
("\\.R\\'" . R-mode)
("\\.Rprofile" . R-mode)
:commands R
:config
;; inspiration for the following:
;; http://stats.blogoverflow.com/2011/08/using-emacs-to-work-with-r/
;; save more commands
(setq comint-input-ring-size 1000)
;; "This recalls the R statement from your R statement history, but it
;; tries to match it with the one which is already on your line."
(add-hook 'inferior-ess-mode-hook
(lambda nil
(define-key inferior-ess-mode-map [\C-up]
'comint-previous-matching-input-from-input)
(define-key inferior-ess-mode-map [\C-down]
'comint-next-matching-input-from-input)
(define-key inferior-ess-mode-map [\C-x \t]
'comint-dynamic-complete-filename)))
;; To assign ":" to "<-" and to stop the assignment of underscore
;; (underbar) "_" to "<-"
(setq ess-smart-S-assign-key ":")
(ess-toggle-S-assign nil)
(ess-toggle-S-assign nil)
(ess-toggle-underscore nil))
;;================================================================================
;;
;; Markdown and polymode
;;
;;================================================================================
(use-package markdown-mode
:ensure t
:mode
("README\\.md\\'" . gfm-mode)
("\\.md\\'" . markdown-mode)
("\\.markdown\\'" . markdown-mode))
(use-package polymode
:ensure t
:mode
("\\.Snw" . poly-noweb+r-mode)
("\\.Rnw" . poly-noweb+r-mode)
("\\.Rmd" . poly-markdown+r-mode))
;;================================================================================
;;
;; reStructuredText
;;
;;================================================================================
(use-package rst
:ensure t
:mode
("\\.rst$" . rst-mode)
("\\.rest$" . rst-mode))
;;================================================================================
;;
;; Python
;;
;;================================================================================
(use-package python)
;; add this to autoformat before saving:
;; :hook ((python-mode . (lambda () (add-hook 'before-save-hook 'lsp-format-buffer nil 'local)))))
(use-package pyvenv
:ensure t
:config
(pyvenv-workon "dotfiles"))
(use-package jedi
:ensure t)
;;================================================================================
;;
;; Git
;;
;;================================================================================
(use-package magit
:ensure t
:bind
("M-m" . magit-status))
;;================================================================================
;;
;; Haskell
;;
;;================================================================================
(use-package haskell-mode
:ensure t
:mode
("\\.hs\\'" . haskell-mode)
("\\.lhs\\'" . haskell-mode))
;;================================================================================
;;