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DESCRIPTION
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DESCRIPTION
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Package: getDEE2
Title: Programmatic access to the DEE2 RNA expression dataset
Version: 1.3.0
Authors@R: c(
person(given = "Mark",
family = "Ziemann",
role = c("aut","cre"),
email = "mark.ziemann@gmail.com"),
person(given="Antony",
family="Kaspi",
role = c("aut"))
)
Description: Digital Expression Explorer 2 (or DEE2 for short) is a repository
of processed RNA-seq data in the form of counts. It was designed so that
researchers could undertake re-analysis and meta-analysis of published
RNA-seq studies quickly and easily. As of April 2020, over 1 million
SRA datasets have been processed. This package provides an R interface
to access these expression data. More information about the DEE2 project
can be found at the project homepage (http://dee2.io) and main publication
(https://doi.org/10.1093/gigascience/giz022).
Depends: R (>= 4.0)
Imports: stats, utils, SummarizedExperiment, htm2txt
Suggests: knitr, testthat, rmarkdown
License: GPL-3
Encoding: UTF-8
URL: https://github.com/markziemann/getDEE2
LazyData: true
RoxygenNote: 7.1.1
biocViews: GeneExpression, Transcriptomics, Sequencing
VignetteBuilder: knitr
BugReport: https://github.com/markziemann/getDEE2