-
Notifications
You must be signed in to change notification settings - Fork 4
/
NAMESPACE
178 lines (177 loc) · 5.37 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
# Generated by roxygen2: do not edit by hand
export(checkLL_RR)
export(getClusterNames)
export(getGeneTable)
export(getIntFlow)
export(run_app)
import(ggplot2)
import(shiny)
importFrom(ComplexHeatmap,Legend)
importFrom(DT,DTOutput)
importFrom(DT,dataTableProxy)
importFrom(DT,datatable)
importFrom(DT,renderDT)
importFrom(DT,selectRows)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useEnsembl)
importFrom(biomaRt,useMart)
importFrom(circlize,CELL_META)
importFrom(circlize,chordDiagram)
importFrom(circlize,circos.clear)
importFrom(circlize,circos.par)
importFrom(circlize,circos.text)
importFrom(circlize,circos.trackPlotRegion)
importFrom(circlize,get.cell.meta.data)
importFrom(circlize,highlight.sector)
importFrom(circlize,uh)
importFrom(colorspace,rainbow_hcl)
importFrom(colourpicker,colourInput)
importFrom(config,get)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,transpose)
importFrom(dendextend,cutree)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,n)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,transmute)
importFrom(factoextra,fviz_nbclust)
importFrom(factoextra,hcut)
importFrom(fmsb,radarchart)
importFrom(fs,path_home)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(golem,activate_js)
importFrom(golem,add_resource_path)
importFrom(golem,bundle_resources)
importFrom(golem,favicon)
importFrom(golem,with_golem_options)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,tiff)
importFrom(htmltools,HTML)
importFrom(htmltools,tagAppendAttributes)
importFrom(htmltools,tagList)
importFrom(htmltools,tags)
importFrom(htmlwidgets,JS)
importFrom(htmlwidgets,saveWidget)
importFrom(igraph,graph_from_data_frame)
importFrom(plotly,add_annotations)
importFrom(plotly,add_trace)
importFrom(plotly,config)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(plyr,mapvalues)
importFrom(readxl,read_excel)
importFrom(scales,hue_pal)
importFrom(scales,rescale)
importFrom(shiny,NS)
importFrom(shiny,Progress)
importFrom(shiny,actionButton)
importFrom(shiny,checkboxGroupInput)
importFrom(shiny,checkboxInput)
importFrom(shiny,column)
importFrom(shiny,conditionalPanel)
importFrom(shiny,downloadButton)
importFrom(shiny,downloadHandler)
importFrom(shiny,fileInput)
importFrom(shiny,fluidRow)
importFrom(shiny,numericInput)
importFrom(shiny,plotOutput)
importFrom(shiny,radioButtons)
importFrom(shiny,reactiveValues)
importFrom(shiny,renderImage)
importFrom(shiny,renderPlot)
importFrom(shiny,renderPrint)
importFrom(shiny,renderUI)
importFrom(shiny,repeatable)
importFrom(shiny,selectInput)
importFrom(shiny,shinyApp)
importFrom(shiny,sidebarLayout)
importFrom(shiny,sidebarPanel)
importFrom(shiny,sliderInput)
importFrom(shiny,tabPanel)
importFrom(shiny,tagList)
importFrom(shiny,textInput)
importFrom(shiny,textOutput)
importFrom(shiny,uiOutput)
importFrom(shiny,updateCheckboxGroupInput)
importFrom(shiny,updateSelectInput)
importFrom(shiny,updateSliderInput)
importFrom(shiny,verbatimTextOutput)
importFrom(shinyFeedback,showFeedbackSuccess)
importFrom(shinyFeedback,useShinyFeedback)
importFrom(shinyFiles,getVolumes)
importFrom(shinyFiles,parseDirPath)
importFrom(shinyFiles,shinyDirButton)
importFrom(shinyFiles,shinyDirChoose)
importFrom(shinyalert,shinyalert)
importFrom(shinyalert,useShinyalert)
importFrom(shinycssloaders,withSpinner)
importFrom(shinydashboard,box)
importFrom(shinydashboard,dashboardBody)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(shinydashboard,dropdownMenu)
importFrom(shinydashboard,infoBox)
importFrom(shinydashboard,infoBoxOutput)
importFrom(shinydashboard,menuItem)
importFrom(shinydashboard,menuSubItem)
importFrom(shinydashboard,notificationItem)
importFrom(shinydashboard,renderInfoBox)
importFrom(shinydashboard,renderValueBox)
importFrom(shinydashboard,sidebarMenu)
importFrom(shinydashboard,tabBox)
importFrom(shinydashboard,tabItem)
importFrom(shinydashboard,tabItems)
importFrom(shinydashboard,valueBox)
importFrom(shinydashboard,valueBoxOutput)
importFrom(signal,sgolayfilt)
importFrom(stats,approx)
importFrom(stats,approxfun)
importFrom(stats,as.dendrogram)
importFrom(stats,complete.cases)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,na.omit)
importFrom(stats,optimize)
importFrom(stats,predict)
importFrom(stats,smooth.spline)
importFrom(tibble,add_column)
importFrom(tidyr,gather)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,unite)
importFrom(tools,file_ext)
importFrom(umap,umap)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,write.csv)
importFrom(visNetwork,renderVisNetwork)
importFrom(visNetwork,visIgraphLayout)
importFrom(visNetwork,visNetwork)
importFrom(visNetwork,visNetworkOutput)
importFrom(visNetwork,visNodes)
importFrom(wordcloud2,renderWordcloud2)
importFrom(wordcloud2,wordcloud2Output)