diff --git a/tests/test_mRNA.py b/tests/test_mRNA.py index a8d01b899..e884aa72e 100644 --- a/tests/test_mRNA.py +++ b/tests/test_mRNA.py @@ -27,8 +27,8 @@ def createTestData(fp): extract_gz(gtfgz, gtfout) # Path to STAR index (created in action) STARpath = Path('tests') / 'data' / 'mRNA_STAR' - STARpath = p.resolve() - + STARpath = STARpath.resolve() + orgyaml = { "genome_size": 94987271 , #we can also extract genome size from STARindex output "genome_fasta": faout.as_posix(),