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extract_code_metadata.py should read in columns contributing to descriptions or parent codes as strings rather than inferring their types. #190

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mmcdermott opened this issue Aug 30, 2024 · 0 comments · Fixed by #191
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extract_code_metadata.py should read in columns contributing to descriptions or parent codes as strings rather than inferring their types. #190

mmcdermott opened this issue Aug 30, 2024 · 0 comments · Fixed by #191
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Blocking External Tools For issues actively blocking external tools, such as ACES, MEDS-torch, MEDS-tab, etc. bug Something isn't working MEDS-Extract Metadata Extraction MIMIC-IV priority:critical A critical priority issue that should be solved and pushed to a new minor version release ASAP.

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This causes the SNOMED error noted in #181
@mmcdermott mmcdermott added bug Something isn't working priority:critical A critical priority issue that should be solved and pushed to a new minor version release ASAP. MIMIC-IV MEDS-Extract Metadata Extraction Blocking External Tools For issues actively blocking external tools, such as ACES, MEDS-torch, MEDS-tab, etc. labels Aug 30, 2024
This was referenced Aug 30, 2024
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@mmcdermott mmcdermott linked a pull request Aug 30, 2024 that will close this issue
Upgraded polars and set infer schema to false for metadata extraction. #191
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Blocking External Tools For issues actively blocking external tools, such as ACES, MEDS-torch, MEDS-tab, etc. bug Something isn't working MEDS-Extract Metadata Extraction MIMIC-IV priority:critical A critical priority issue that should be solved and pushed to a new minor version release ASAP.
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Upgraded polars and set infer schema to false for metadata extraction. mmcdermott/MEDS_transforms
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