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de-noise or error correct sequences with UMI barcoding #22

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anoronh4 opened this issue Mar 21, 2023 · 1 comment
Open

de-noise or error correct sequences with UMI barcoding #22

anoronh4 opened this issue Mar 21, 2023 · 1 comment
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backburner enhancement New feature or request question Further information is requested

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@anoronh4
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anoronh4 commented Mar 21, 2023 •
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We need to find out how UMI-tools does any error correction (if at all) during deduplication, or find a tool that will perform it for us. start with looking at marianas, HUMID, Fgbio, UMIc, UMIErrorCorrect (python package)
@anoronh4 anoronh4 added enhancement New feature or request question Further information is requested labels Mar 21, 2023
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anoronh4 commented Jun 2, 2023

For now, this is low priority because umi tools chooses one representative read in a way that we're happy with. I have added the backburner label.

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