Releases: ncbo/ontologies_api
Releases · ncbo/ontologies_api
v5.26.0
What's Changed
- reduce request limit for resource intensive api calls by @alexskr in #121
- Announce deployments in NewRelic by @alexskr in #124
- Fix get a submission metrics by @syphax-bouazzouni in #78
- Remove redis activesupport by @alexskr in #120
Full Changelog: v5.25.0...v5.26.0
ontologies_linked_data
- Remove dependency on minitest wrapper for Test::Unit by @alexskr in ncbo/ontologies_linked_data#168
- Fix: bug in the get_rest_mapping method by @syphax-bouazzouni in ncbo/ontologies_linked_data#156
- Refactor: extract replace rest_url_prefix to id_url_prefix and and vice versa methods by @syphax-bouazzouni in ncbo/ontologies_linked_data#155
- Feature: enhance zipped submissions support by @syphax-bouazzouni in ncbo/ontologies_linked_data#144,
ncbo/ontologies_linked_data#174 and ncbo/ontologies_linked_data#172
Full Changelog: ncbo/ontologies_linked_data@v5.25.0...v5.26.0
goo
- Refactor: Queries module code refactor by @syphax-bouazzouni in ncbo/goo#117
- Refactor: resources validators by @syphax-bouazzouni in ncbo/goo#138
- Feature: implement new validators by @syphax-bouazzouni in ncbo/goo#139
Full Changelog: ncbo/goo@v5.25.0...v5.26.0
ncbo_cron
https://github.com/ncbo/ncbo_cron/releases/tag/v5.26.0
Contributors
alexskr and syphax-bouazzouni
Assets 2
v5.25.0
Full Changelog: v5.24.0...v5.25.0
v5.24.0
What's Changed
ontologies_api
- Add client-side caching for analytics endpoint by @alexskr in #96
- Fix: Documentation rendering by @syphax-bouazzouni in #107
- Fix: Deprecation notice of Rack::Attack.throttled_response
- docker images are published to https://hub.docker.com/?namespace=bioportal automatically on each new release
New Contributors
- @syphax-bouazzouni made their first contribution in #107
Full Changelog: v5.23.1...v5.24.0
ontologies_linked_data
- Fix: remove submission directory and files on submission delete by @syphax-bouazzouni in ncbo/ontologies_linked_data#136
- owlapi-wrapper version 1.4.1 includes refactoring and java based max depth calculation
Full Changelog: ncbo/ontologies_linked_data@v5.23.0...v5.24.0
ncbo_cron
https://github.com/ncbo/ncbo_cron/releases/tag/v5.24.0
New Contributors
- @syphax-bouazzouni made their first contribution in #107
Full Changelog: v5.23.1...v5.24.0
goo
- Add code coverage report uploads to codecove.io by @alexskr in ncbo/goo#126
- Feature: Add regex filter by @syphax-bouazzouni in ncbo/goo#116
- AllegroGraph compatibility updates
Full Changelog: ncbo/goo@v5.23.0...v5.24.0
Contributors
alexskr and syphax-bouazzouni
Assets 2
5.23.1
Bump up version of rack-attack to v6.6.1 to address redis pipeline deprecation warning
Full Changelog: v5.23.0...v5.23.1
5.23.0
What's Changed
ontologies_api
- Added Docker-based unit testing / GitHub Actions (#79)
- Upgraded to Ruby 2.7
- Added a DIP (Docker Interaction Program) configuration file (2b229fa)
- Removed dependency on the obsolete NCBO Resource Index (#80)
- Removed deprecated crossdomain.xml (#82)
Full changelog: v5.22.3...v5.23.0
ontologies_linked_data
- Fixed an issue that caused exceptions when deleting ontologies with provisional classes (contributed by @syphax-bouazzouni in ncbo/ontologies_linked_data#128)
- Java heap size is now configurable instead of hardcoded (contributed by @syphax-bouazzouni in ncbo/ontologies_linked_data#130)
- Fixed an issue that caused failures in the nightly pull process for ontologies with pull URLs that resolve to GitHub releases (contributed by @syphax-bouazzouni in ncbo/ontologies_linked_data#134)
- Upgraded to Ruby 2.7
- Added a GitHub Action for running unit tests against AllegroGraph
- Added Codecov code coverage reporting (ncbo/ontologies_linked_data#150)
- Removed dependency on the obsolete NCBO Resource Index
- Upgraded addressable gem to 2.8 (ncbo/ontologies_linked_data#142)
Full changelog: ncbo/ontologies_linked_data@v5.22.3...v5.23.0
ncbo_annotator
- Added Docker-based unit testing
- Upgraded to Ruby 2.7
- Fixed "Pipelining commands on a Redis instance is deprecated..." warning output (ncbo/ncbo_annotator#24)
- Removed dependency on the obsolete NCBO Resource Index
Full changelog: ncbo/ncbo_annotator@v5.22.3...v5.23.0
ncbo_ontology_recommender
- Added Docker-based unit testing
- Upgraded to Ruby 2.7
- Removed dependency on the obsolete NCBO Resource Index
Full changelog: ncbo/ncbo_ontology_recommender@v5.22.3...v5.23.0
ncbo_cron
- Added Docker-based unit testing
- Implemented a temporary workaround for stalls during ontology processing caused by annotator dictionary file regeneration (ncbo/ncbo_cron@15a52ed)
- Fixed an issue with random failures while generating Google analytics (ncbo/ncbo_cron#54)
- Removed dependency on the obsolete NCBO Resource Index
Full changelog: ncbo/ncbo_cron@v5.22.3...v5.23.0
goo
- Added Docker-based unit testing
- Upgraded addressable gem to 2.8 (ncbo/goo#120)
- Fixed several failing unit tests
- Fixed several deprecation warnings
- Corrected test file names in Rakefile
Full changelog: ncbo/goo@v5.22.3...v5.23.0
Contributors
syphax-bouazzouni
Assets 2
5.22.3
Bundled a new version of the owlapi_wrapper to explicitly ban the TriX parser, which eases debugging of some RDF ontologies.
Full Changelog: v5.22.2...v5.22.3
5.22.2
Enhancements
- Added a contributor's guide and code of conduct.
- Bundled a new version of the owlapi_wrapper:
- Upgraded to version 4.5.18 of the OWL API
- Fixed an issue that caused NoClassDefFoundError exceptions during parsing of some ontologies (ncbo/owlapi_wrapper#16)
- Fixed an issue that prevented the ability to run unit tests via Rake (f217cf6).
Full Changelog: v5.22.1...v5.22.2
5.22.1
- Fixed a bug that caused mapping submission IDs queries to fail in AllegroGraph (ncbo/ontologies_linked_data#120)
- Fixed a bug that prevented UMLS ontologies from processing in AllegroGraph (ncbo/bioportal-project#215)
- Fixed a security vulnerability
Full Changelog: v5.22.0...v5.22.1
5.21.0
Enhancements
- Further optimizations to the mapping counts generation job, including periodic 4store health checks (ncbo/ncbo_cron#40)
- Added incremental progress logging to the Annotator dictionary generation job (ncbo/ncbo_annotator#16)
Bug Fixes
- Repaired the 4store health status check API (ncbo/goo#112)
Full Changelog: v5.20.0...v5.21.0
5.20.0
Enhancements
- New CRON job that allows on-demand regeneration of total mapping counts and mapping count pairs (ncbo/ncbo_cron#37)
- Modified the nightly ontology pull process to clear application caches after completion of a full run (ncbo/ncbo_cron#38)
Bug Fixes
- Mapping counts generation script failed to properly count mappings between ontoloigies (ncbo/ontologies_linked_data#88)
- Reported mapping counts between ontologies were always higher than actual counts (ncbo/ontologies_linked_data#115)
- Incorrect mapping count statistics generated for some ontologies (ncbo/ontologies_linked_data#94)
- Empty pages in paged result sets (ncbo/ontologies_linked_data#66)
Full Changelog: v5.19.0...v5.20.0