From 97751f42bf67b70f105e754848dca5398763fbc8 Mon Sep 17 00:00:00 2001
From: PozhidayevaDarya <106110175+PozhidayevaDarya@users.noreply.github.com>
Date: Wed, 26 Jun 2024 09:37:53 -0700
Subject: [PATCH 1/2] Update HTAN.model.csv

Add an additional valid value to the Antibody Role Attribute - "Neither - Dye/Stain"
Add "Not Applicable" as valid value to RRID Identifier Attribute
---
 HTAN.model.csv | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/HTAN.model.csv b/HTAN.model.csv
index 7e9938ee..9923ba15 100644
--- a/HTAN.model.csv
+++ b/HTAN.model.csv
@@ -222,9 +222,9 @@ Channel QC Failure Comment,Custom comment on channel QC faliure,,,,FALSE,Imaging
 Cycle Number,The cycle # in which the co-listed reagent(s) was(were) used. Integer >= 1 (up to number of cycles),,,,FALSE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,int
 Sub Cycle Number,Sub cycle number,,,,FALSE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,int
 Target Name,Short descriptive name (abbreviation) for this target (antigen),,,,TRUE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,
-Antibody Role," ""Is this antibody acting as a primary or secondary antibody""","Primary,Secondary",,,TRUE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,
+Antibody Role," ""Is this antibody acting as a primary or secondary antibody""","Primary,Secondary,Neither-Dye/Stain",,,TRUE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,
 Antibody Name,"Antibody Name (free text (eg “Keratin”, “CD163”, “DNA”))",,,,TRUE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,
-RRID identifier,Research Resource Identifier (eg “RRID: AB_394606”),,,,TRUE,Imaging Level 3 Channels,,https://scicrunch.org/resources,regex match AB_\d+
+RRID identifier,Research Resource Identifier (eg “RRID: AB_394606”),,,,TRUE,Imaging Level 3 Channels,,https://scicrunch.org/resources,regex match AB_\d+|Not\sApplicable$
 Fluorophore,Fluorescent dye label (eg Alexa Fluor 488),,,,FALSE,Imaging Level 3 Channels,,http://purl.obolibrary.org/obo/MI_0857,
 Clone,Clone,,,,FALSE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,
 Lot,Lot number from vendor,,,,FALSE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,

From 6329af77fabb4ed6f9f50024e5c63d98a196bb51 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Wed, 26 Jun 2024 16:45:45 +0000
Subject: [PATCH 2/2] GitHub Action: convert *.model.csv to *.model.jsonld

---
 HTAN.model.jsonld | 22 +++++++++++++++++++++-
 1 file changed, 21 insertions(+), 1 deletion(-)

diff --git a/HTAN.model.jsonld b/HTAN.model.jsonld
index c8b09fc7..35c9ac9c 100644
--- a/HTAN.model.jsonld
+++ b/HTAN.model.jsonld
@@ -49391,6 +49391,9 @@
                 },
                 {
                     "@id": "bts:Secondary"
+                },
+                {
+                    "@id": "bts:Neither-Dye/Stain"
                 }
             ],
             "sms:displayName": "Antibody Role",
@@ -49447,7 +49450,7 @@
             "sms:displayName": "RRID identifier",
             "sms:required": "sms:true",
             "sms:validationRules": [
-                "regex match AB_\\d+"
+                "regex match AB_\\d+|Not\\sApplicable$"
             ]
         },
         {
@@ -50228,6 +50231,23 @@
             "sms:required": "sms:false",
             "sms:validationRules": []
         },
+        {
+            "@id": "bts:Neither-Dye/Stain",
+            "@type": "rdfs:Class",
+            "rdfs:comment": "TBD",
+            "rdfs:label": "Neither-Dye/Stain",
+            "rdfs:subClassOf": [
+                {
+                    "@id": "bts:AntibodyRole"
+                }
+            ],
+            "schema:isPartOf": {
+                "@id": "http://schema.biothings.io"
+            },
+            "sms:displayName": "Neither-Dye/Stain",
+            "sms:required": "sms:false",
+            "sms:validationRules": []
+        },
         {
             "@id": "bts:H",
             "@type": "rdfs:Class",