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sub_SETTINGS.yaml
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sub_SETTINGS.yaml
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bandpass_filter_settings:
bandpower_features: {activity: true, complexity: false, mobility: false}
kalman_filter: false
log_transform: true
segment_lengths_ms: {HFA: 100, alpha: 500, high_beta: 333, high_gamma: 100, low_beta: 333,
low_gamma: 100, theta: 1000}
bispectrum_settings:
bispectrum_features: {mean: true, sum: true, var: true}
components: {absolute: true, imag: true, phase: true, real: true}
compute_features_for_whole_fband_range: true
f1s: {frequency_high_hz: 35.0, frequency_low_hz: 5.0}
f2s: {frequency_high_hz: 35.0, frequency_low_hz: 5.0}
frequency_bands: [theta, alpha, low_beta, high_beta]
burst_settings:
burst_features: {amplitude: true, burst_rate_per_s: true, duration: true, in_burst: true}
frequency_bands: [low_beta, high_beta, low_gamma]
threshold: 75.0
time_duration_s: 30.0
coherence_settings:
channels: []
features: {max_allfbands: true, max_fband: true, mean_fband: true}
frequency_bands: [high_beta]
method: {coh: true, icoh: true}
feature_normalization_settings: {clip: 3.0, normalization_method: zscore, normalization_time_s: 30.0}
features: {bandpass_filter: false, bispectrum: false, bursts: false, coherence: false,
fft: false, fooof: false, linelength: false, mne_connectivity: false, nolds: false,
raw_hjorth: false, return_raw: false, sharpwave_analysis: true, stft: false, welch: false}
fft_settings:
features: {max: false, mean: true, median: false, std: false}
log_transform: true
return_spectrum: false
windowlength_ms: 1000
fooof_settings:
aperiodic: {exponent: true, knee: true, offset: true}
freq_range_hz: {frequency_high_hz: 40.0, frequency_low_hz: 2.0}
knee: true
max_n_peaks: 3
min_peak_height: 0.0
peak_threshold: 2.0
peak_width_limits: {frequency_high_hz: 12.0, frequency_low_hz: 0.5}
periodic: {band_width: false, center_frequency: false, height_over_ap: false}
windowlength_ms: 800.0
frequency_ranges_hz:
HFA: {frequency_high_hz: 400.0, frequency_low_hz: 200.0}
alpha: {frequency_high_hz: 12.0, frequency_low_hz: 8.0}
high_beta: {frequency_high_hz: 35.0, frequency_low_hz: 20.0}
high_gamma: {frequency_high_hz: 200.0, frequency_low_hz: 90.0}
low_beta: {frequency_high_hz: 20.0, frequency_low_hz: 13.0}
low_gamma: {frequency_high_hz: 80.0, frequency_low_hz: 60.0}
theta: {frequency_high_hz: 8.0, frequency_low_hz: 4.0}
kalman_filter_settings:
Tp: 0.1
frequency_bands: [theta, alpha, low_beta, high_beta, low_gamma, high_gamma, HFA]
sigma_v: 1.0
sigma_w: 0.7
mne_connectivity_settings: {method: plv, mode: multitaper}
mne_connectiviy_settings: {method: plv, mode: multitaper}
nolds_settings:
correlation_dimension: false
data:
frequency_bands: [low_beta]
raw: true
detrended_fluctutaion_analysis: false
features: {correlation_dimension: false, detrended_fluctuation_analysis: false,
hurst_exponent: false, lyapunov_exponent: true, sample_entropy: false}
frequency_bands: [low_beta]
hurst_exponent: false
lyapunov_exponent: true
raw: true
sample_entropy: false
postprocessing: {feature_normalization: false, project_cortex: false, project_subcortex: false}
preprocessing: []
preprocessing_filter:
bandpass_filter: true
bandpass_filter_settings: {frequency_high_hz: 200.0, frequency_low_hz: 3.0}
bandstop_filter: true
bandstop_filter_settings: {frequency_high_hz: 160.0, frequency_low_hz: 100.0}
highpass_filter: true
highpass_filter_cutoff_hz: 3.0
lowpass_filter: true
lowpass_filter_cutoff_hz: 200.0
project_cortex_settings: {max_dist_mm: 20.0}
project_subcortex_settings: {max_dist_mm: 5.0}
raw_normalization_settings: {clip: 3.0, normalization_method: zscore, normalization_time_s: 30.0}
raw_resampling_settings: {resample_freq_hz: 1000.0}
sampling_rate_features_hz: 10.0
segment_length_features_ms: 1000.0
sharpwave_analysis_settings:
apply_estimator_between_peaks_and_troughs: true
detect_peaks: {distance_peaks_ms: 10.0, distance_troughs_ms: 5.0, estimate: true}
detect_troughs: {distance_peaks_ms: 5.0, distance_troughs_ms: 10.0, estimate: true}
estimator:
max: [prominence, sharpness]
mean: [interval]
median: []
min: []
var: []
filter_ranges_hz:
- {frequency_high_hz: 80.0, frequency_low_hz: 5.0}
sharpwave_features: {decay_steepness: false, decay_time: false, interval: true,
num_peaks: false, peak_left: false, peak_right: false, prominence: true, rise_steepness: false,
rise_time: false, sharpness: true, slope_ratio: false, trough: false, width: false}
stft_settings:
features: {max: false, mean: true, median: false, std: false}
log_transform: true
return_spectrum: false
windowlength_ms: 500
welch_settings:
features: {max: false, mean: true, median: false, std: false}
log_transform: true
return_spectrum: false
windowlength_ms: 1000