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We should not guess divergence unit #1238

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rneher opened this issue Dec 2, 2020 · 0 comments
Open

We should not guess divergence unit #1238

rneher opened this issue Dec 2, 2020 · 0 comments
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@rneher
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rneher commented Dec 2, 2020

Current Behavior
There are different options for divergence units: "substitutions" and "substitutions per site". We currently guess these pretty adhoc:

https://github.com/nextstrain/auspice/blob/master/src/components/tree/phyloTree/renderers.js#L370

We need to

  • export the divergence unit in refine
  • add it to the schema
  • export it from augur
  • parse this in auspice.
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