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Remove replicates of HRA 3D models---use only latest version #3315

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emquardokus opened this issue Jul 21, 2024 · 4 comments
Closed

Remove replicates of HRA 3D models---use only latest version #3315

emquardokus opened this issue Jul 21, 2024 · 4 comments
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@emquardokus
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Uberon term
Affects all HuBMAP HRA organs in Uberon that are linked to HRA; there are male and female versions of most of the organs

Examples : this affects all of the HRA organs, these are only 3 examples; this is likely just something that can be corrected by a general code change? Use latest version rather than all versions.
Note that file naming schema changed over the 7 HRA releases, so if you are using unique file name, that will not work.

http://purl.obolibrary.org/obo/UBERON_0001264 pancreas
http://purl.obolibrary.org/obo/UBERON_0000059 large intestine
http://purl.obolibrary.org/obo/UBERON_0002108 small intestine

Bug description

Example of 3D models from HRA where every HRA released version is shown.
Screenshot 2024-07-20 at 10 22 06 PM

It should only show the latest from https://lod.humanatlas.io/
Screenshot 2024-07-20 at 10 24 13 PM

from here: https://lod.humanatlas.io/ref-organ/pancreas-female/latest/
You would use the latest version of the .glb file linked at bottom

Ellen Quardokus orcid: 0000-0001-7655-4833

@aleixpuigb
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Thank you @emquardokus. @anitacaron solved this last week in #3314. It should be only the latest in the next release.

@anitacaron
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This was finally fixed and is already available in the OLS.

Screenshot 2024-08-09 at 10 10 02

@emquardokus
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@anitacaron I just checked this out and kidney 3D models are gone now from uberon. I checked small intestine, large intestine, pancreas, heart, lung, skin of body, spleen, prostate gland---all good. I did not check all the organs we have models for, but this one stood out as it's one of our most popular. Can you check why this one is gone now?

@emquardokus emquardokus reopened this Aug 9, 2024
@anitacaron
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@emquardokus I'll move your question to the ccf-validation-tools repo which is where I query the HRA KG and get the GLB files.

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