diff --git a/ro.obo b/ro.obo index e9b34714..507cc173 100644 --- a/ro.obo +++ b/ro.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2016-10-28 +data-version: releases/2017-03-23 subsetdef: ro-eco "" subsetdef: RO:0002259 "" remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0] @@ -19,7 +19,7 @@ property_value: http://purl.org/dc/elements/1.1/description "The OBO Relations O property_value: http://purl.org/dc/elements/1.1/source http://obofoundry.org/ro property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" xsd:string property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI -owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\n############################\n# Annotation Properties\n############################\n\n# Annotation Property: (first order logic expression)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (temporal interpretation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (never in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (mutually spatially disjoint with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (taxonomic class assertion)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (ambiguous for taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (dubious for taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (present in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (annotation property cardinality)\n\nSubAnnotationPropertyOf( )\nAnnotationPropertyRange( xsd:nonNegativeInteger)\n\n# Annotation Property: (logical macro assertion on a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on a property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an object property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an annotation property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (dispositional interpretation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has no connections with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (curator guidance link)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (always present in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (temporal logical macro assertion on a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (measurement property has unit)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has start time value)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has end time value)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, days post fertilization)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, days post fertilization)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, years post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, years post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, months post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, months post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (month of gestation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has developmental stage marker)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, days post coitum)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, days post coitum)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, weeks post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, weeks post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is asymmetric relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is symmetric relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is direct form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is indirect form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is a defining property chain axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is a defining property chain axiom where second argument is reflexive)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is relational form of a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion involving identity)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (in approximate one to one relationship with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is approximately equivalent to)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is opposite of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is indistinguishable from)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (evidential logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (axiom has evidence)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (axiom contradicted by evidence)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is representative IRI for equivalence set)\n\nSubAnnotationPropertyOf( )\n\n\n############################\n# Object Properties\n############################\n\n# Object Property: (coincident with)\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (synapsed by)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (has fasciculating neuron projection)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (connected to)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (connects)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (directly develops from)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (enabled by)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (has member)\n\nIrreflexiveObjectProperty()\n\n# Object Property: (anabranch of)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (branching part of)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (differs in attribute of)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n\n############################\n# Classes\n############################\n\n# Class: (material entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (immaterial entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (ubiquitin-protein ligase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (symbiosis, encompassing mutualism through parasitism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (parasitism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (mutualism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (commensalism)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\n) +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\n############################\n# Annotation Properties\n############################\n\n# Annotation Property: (first order logic expression)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (temporal interpretation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (never in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (mutually spatially disjoint with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (taxonomic class assertion)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (ambiguous for taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (dubious for taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (present in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (annotation property cardinality)\n\nSubAnnotationPropertyOf( )\nAnnotationPropertyRange( xsd:nonNegativeInteger)\n\n# Annotation Property: (logical macro assertion on a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on a property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an object property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an annotation property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (dispositional interpretation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has no connections with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (curator guidance link)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (always present in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (temporal logical macro assertion on a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (measurement property has unit)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has start time value)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has end time value)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, days post fertilization)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, days post fertilization)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, years post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, years post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, months post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, months post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (month of gestation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has developmental stage marker)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, days post coitum)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, days post coitum)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, weeks post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, weeks post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is asymmetric relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is symmetric relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is direct form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is indirect form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is a defining property chain axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is a defining property chain axiom where second argument is reflexive)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is relational form of a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion involving identity)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (in approximate one to one relationship with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is approximately equivalent to)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is opposite of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is indistinguishable from)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (evidential logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (axiom has evidence)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (axiom contradicted by evidence)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is representative IRI for equivalence set)\n\nSubAnnotationPropertyOf( )\n\n\n############################\n# Object Properties\n############################\n\n# Object Property: (coincident with)\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (synapsed by)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (has fasciculating neuron projection)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (connected to)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (connects)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (directly develops from)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (enabled by)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (has member)\n\nIrreflexiveObjectProperty()\n\n# Object Property: (anabranch of)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (branching part of)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (differs in attribute of)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n\n############################\n# Classes\n############################\n\n# Class: (material entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (immaterial entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (ubiquitin-protein ligase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (symbiosis, encompassing mutualism through parasitism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (parasitism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (mutualism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (commensalism)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\n) [Term] id: BFO:0000002 @@ -1742,6 +1742,7 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string holds_over_chain: RO:0002230 RO:0002212 +is_transitive: true is_a: RO:0002211 ! regulates is_a: RO:0002305 ! causally upstream of, negative effect inverse_of: RO:0002335 ! negatively regulated by @@ -1755,6 +1756,7 @@ property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relati property_value: IAO:0000589 "positively regulates (process to process)" xsd:string holds_over_chain: RO:0002212 RO:0002212 holds_over_chain: RO:0002230 RO:0002213 +is_transitive: true is_a: RO:0002211 ! regulates is_a: RO:0002304 ! causally upstream of, positive effect inverse_of: RO:0002336 ! positively regulated by @@ -4612,6 +4614,62 @@ name: correlated with condition def: "A relationship between an entity and a condition (phenotype or disease) with which it exhibits a statistical dependence relationship." [] is_a: RO:0002610 ! correlated with +[Typedef] +id: RO:0008501 +name: epiphyte of +def: "An interaction relationship wherein a plant or algae is living on the outside surface of another plant." [] +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Epiphyte xsd:string +is_a: RO:0002440 ! symbiotically interacts with +inverse_of: RO:0008502 ! has epiphyte + +[Typedef] +id: RO:0008502 +name: has epiphyte +def: "inverse of epiphyte of" [] +subset: RO:0002259 +is_a: RO:0002440 ! symbiotically interacts with + +[Typedef] +id: RO:0008503 +name: kleptoparasite of +def: "A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material" [] +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Kleptoparasitism xsd:string +is_a: RO:0002444 ! parasite of +inverse_of: RO:0008504 ! kleptoparasitized by + +[Typedef] +id: RO:0008504 +name: kleptoparasitized by +def: "inverse of kleptoparasite of" [] +subset: RO:0002259 +is_a: RO:0002445 ! parasitized by + +[Typedef] +id: RO:0008505 +name: creates habitat for +def: "An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism." [] +is_a: RO:0002321 ! ecologically related to + +[Typedef] +id: RO:0008506 +name: co-occurs +def: "An interaction relationship describing organisms that often occur together at the same time and space or in the same environment." [] +is_symmetric: true +is_a: RO:0002321 ! ecologically related to + +[Typedef] +id: RO:0008507 +name: lays eggs on +def: "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." [] +is_a: RO:0002618 ! visits +inverse_of: RO:0008508 ! has eggs laid on by + +[Typedef] +id: RO:0008508 +name: has eggs laid on by +def: "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." [] +is_a: RO:0002619 ! visited by + [Typedef] id: RO:HOM0000000 name: in similarity relationship with diff --git a/ro.owl b/ro.owl index 8c407b91..ca201dbe 100644 --- a/ro.owl +++ b/ro.owl @@ -1,19 +1,21 @@ - + @@ -2327,6 +2329,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + @@ -2347,6 +2350,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + @@ -6930,6 +6934,94 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + epiphyte of + + + + + + + + + inverse of epiphyte of + + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + has eggs laid on by + + + + @@ -7527,6 +7619,158 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/src/ontology/ro.obo b/src/ontology/ro.obo index e9b34714..507cc173 100644 --- a/src/ontology/ro.obo +++ b/src/ontology/ro.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2016-10-28 +data-version: releases/2017-03-23 subsetdef: ro-eco "" subsetdef: RO:0002259 "" remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0] @@ -19,7 +19,7 @@ property_value: http://purl.org/dc/elements/1.1/description "The OBO Relations O property_value: http://purl.org/dc/elements/1.1/source http://obofoundry.org/ro property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" xsd:string property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI -owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\n############################\n# Annotation Properties\n############################\n\n# Annotation Property: (first order logic expression)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (temporal interpretation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (never in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (mutually spatially disjoint with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (taxonomic class assertion)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (ambiguous for taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (dubious for taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (present in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (annotation property cardinality)\n\nSubAnnotationPropertyOf( )\nAnnotationPropertyRange( xsd:nonNegativeInteger)\n\n# Annotation Property: (logical macro assertion on a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on a property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an object property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an annotation property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (dispositional interpretation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has no connections with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (curator guidance link)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (always present in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (temporal logical macro assertion on a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (measurement property has unit)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has start time value)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has end time value)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, days post fertilization)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, days post fertilization)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, years post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, years post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, months post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, months post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (month of gestation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has developmental stage marker)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, days post coitum)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, days post coitum)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, weeks post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, weeks post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is asymmetric relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is symmetric relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is direct form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is indirect form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is a defining property chain axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is a defining property chain axiom where second argument is reflexive)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is relational form of a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion involving identity)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (in approximate one to one relationship with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is approximately equivalent to)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is opposite of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is indistinguishable from)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (evidential logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (axiom has evidence)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (axiom contradicted by evidence)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is representative IRI for equivalence set)\n\nSubAnnotationPropertyOf( )\n\n\n############################\n# Object Properties\n############################\n\n# Object Property: (coincident with)\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (synapsed by)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (has fasciculating neuron projection)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (connected to)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (connects)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (directly develops from)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (enabled by)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (has member)\n\nIrreflexiveObjectProperty()\n\n# Object Property: (anabranch of)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (branching part of)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (differs in attribute of)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n\n############################\n# Classes\n############################\n\n# Class: (material entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (immaterial entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (ubiquitin-protein ligase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (symbiosis, encompassing mutualism through parasitism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (parasitism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (mutualism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (commensalism)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\n) +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\n############################\n# Annotation Properties\n############################\n\n# Annotation Property: (first order logic expression)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (temporal interpretation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (never in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (mutually spatially disjoint with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (taxonomic class assertion)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (ambiguous for taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (dubious for taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (present in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (annotation property cardinality)\n\nSubAnnotationPropertyOf( )\nAnnotationPropertyRange( xsd:nonNegativeInteger)\n\n# Annotation Property: (logical macro assertion on a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on a property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an object property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an annotation property)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (dispositional interpretation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has no connections with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (curator guidance link)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (always present in taxon)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (temporal logical macro assertion on a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (measurement property has unit)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has start time value)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has end time value)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, days post fertilization)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, days post fertilization)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, years post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, years post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, months post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, months post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (month of gestation)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (has developmental stage marker)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, days post coitum)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, days post coitum)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (start, weeks post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (end, weeks post birth)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is asymmetric relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is symmetric relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is relational form of process class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is direct form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is indirect form of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is a defining property chain axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is a defining property chain axiom where second argument is reflexive)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is relational form of a class)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (logical macro assertion involving identity)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (in approximate one to one relationship with)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is approximately equivalent to)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is opposite of)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is indistinguishable from)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (evidential logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (axiom has evidence)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (axiom contradicted by evidence)\n\nSubAnnotationPropertyOf( )\n\n# Annotation Property: (is representative IRI for equivalence set)\n\nSubAnnotationPropertyOf( )\n\n\n############################\n# Object Properties\n############################\n\n# Object Property: (coincident with)\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (synapsed by)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (has fasciculating neuron projection)\n\nObjectPropertyRange( ObjectUnionOf( ObjectSomeValuesFrom( )))\n\n# Object Property: (connected to)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (connects)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (directly develops from)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n# Object Property: (enabled by)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (has member)\n\nIrreflexiveObjectProperty()\n\n# Object Property: (anabranch of)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (branching part of)\n\nObjectPropertyRange( ObjectSomeValuesFrom( ))\n\n# Object Property: (differs in attribute of)\n\nObjectPropertyRange( ObjectUnionOf( ))\n\n\n############################\n# Classes\n############################\n\n# Class: (material entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (immaterial entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (ubiquitin-protein ligase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (symbiosis, encompassing mutualism through parasitism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (parasitism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (mutualism)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (commensalism)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\n) [Term] id: BFO:0000002 @@ -1742,6 +1742,7 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string holds_over_chain: RO:0002230 RO:0002212 +is_transitive: true is_a: RO:0002211 ! regulates is_a: RO:0002305 ! causally upstream of, negative effect inverse_of: RO:0002335 ! negatively regulated by @@ -1755,6 +1756,7 @@ property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relati property_value: IAO:0000589 "positively regulates (process to process)" xsd:string holds_over_chain: RO:0002212 RO:0002212 holds_over_chain: RO:0002230 RO:0002213 +is_transitive: true is_a: RO:0002211 ! regulates is_a: RO:0002304 ! causally upstream of, positive effect inverse_of: RO:0002336 ! positively regulated by @@ -4612,6 +4614,62 @@ name: correlated with condition def: "A relationship between an entity and a condition (phenotype or disease) with which it exhibits a statistical dependence relationship." [] is_a: RO:0002610 ! correlated with +[Typedef] +id: RO:0008501 +name: epiphyte of +def: "An interaction relationship wherein a plant or algae is living on the outside surface of another plant." [] +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Epiphyte xsd:string +is_a: RO:0002440 ! symbiotically interacts with +inverse_of: RO:0008502 ! has epiphyte + +[Typedef] +id: RO:0008502 +name: has epiphyte +def: "inverse of epiphyte of" [] +subset: RO:0002259 +is_a: RO:0002440 ! symbiotically interacts with + +[Typedef] +id: RO:0008503 +name: kleptoparasite of +def: "A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material" [] +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Kleptoparasitism xsd:string +is_a: RO:0002444 ! parasite of +inverse_of: RO:0008504 ! kleptoparasitized by + +[Typedef] +id: RO:0008504 +name: kleptoparasitized by +def: "inverse of kleptoparasite of" [] +subset: RO:0002259 +is_a: RO:0002445 ! parasitized by + +[Typedef] +id: RO:0008505 +name: creates habitat for +def: "An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism." [] +is_a: RO:0002321 ! ecologically related to + +[Typedef] +id: RO:0008506 +name: co-occurs +def: "An interaction relationship describing organisms that often occur together at the same time and space or in the same environment." [] +is_symmetric: true +is_a: RO:0002321 ! ecologically related to + +[Typedef] +id: RO:0008507 +name: lays eggs on +def: "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." [] +is_a: RO:0002618 ! visits +inverse_of: RO:0008508 ! has eggs laid on by + +[Typedef] +id: RO:0008508 +name: has eggs laid on by +def: "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." [] +is_a: RO:0002619 ! visited by + [Typedef] id: RO:HOM0000000 name: in similarity relationship with diff --git a/src/ontology/ro.owl b/src/ontology/ro.owl index 8c407b91..ca201dbe 100644 --- a/src/ontology/ro.owl +++ b/src/ontology/ro.owl @@ -1,19 +1,21 @@ - + @@ -2327,6 +2329,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + @@ -2347,6 +2350,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + @@ -6930,6 +6934,94 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + epiphyte of + + + + + + + + + inverse of epiphyte of + + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + has eggs laid on by + + + + @@ -7527,6 +7619,158 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/src/ontology/subsets/ro-causal.obo b/src/ontology/subsets/ro-causal.obo index 17d96d66..29c72ec2 100644 --- a/src/ontology/subsets/ro-causal.obo +++ b/src/ontology/subsets/ro-causal.obo @@ -455,6 +455,14 @@ xref: RO:0002478 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: child_nucleus_of ! child nucleus of +[Typedef] +id: co-occurs +name: co-occurs +def: "An interaction relationship describing organisms that often occur together at the same time and space or in the same environment." [] +xref: RO:0008506 +is_symmetric: true +is_a: ecologically_related_to ! ecologically related to + [Typedef] id: coincident_with name: coincident with @@ -633,6 +641,13 @@ def: "A relationship between an entity and a condition (phenotype or disease) wi xref: RO:0003308 is_a: correlated_with ! correlated with +[Typedef] +id: creates_habitat_for +name: creates habitat for +def: "An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism." [] +xref: RO:0008505 +is_a: ecologically_related_to ! ecologically related to + [Typedef] id: dendrite_synapsed_in name: dendrite synapsed in @@ -1036,6 +1051,15 @@ xref: RO:0002230 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: has_part +[Typedef] +id: epiphyte_of +name: epiphyte of +def: "An interaction relationship wherein a plant or algae is living on the outside surface of another plant." [] +xref: RO:0008501 +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Epiphyte xsd:string +is_a: symbiotically_interacts_with ! symbiotically interacts with +inverse_of: has_epiphyte ! has epiphyte + [Typedef] id: exports name: exports @@ -1233,6 +1257,13 @@ xref: RO:0002625 is_a: parasitized_by ! parasitized by is_a: visited_by ! visited by +[Typedef] +id: has_eggs_laid_on_by +name: has eggs laid on by +def: "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." [] +xref: RO:0008508 +is_a: visited_by ! visited by + [Typedef] id: has_end_sequence name: has end sequence @@ -1253,6 +1284,14 @@ name: has endoparasite xref: RO:0002635 is_a: parasitized_by ! parasitized by +[Typedef] +id: has_epiphyte +name: has epiphyte +def: "inverse of epiphyte of" [] +subset: RO:0002259 +xref: RO:0008502 +is_a: symbiotically_interacts_with ! symbiotically interacts with + [Typedef] id: has_exposure_receptor name: has exposure receptor @@ -2077,6 +2116,23 @@ property_value: IAO:0000119 https://github.com/jhpoelen/eol-globi-data/issues/14 is_a: participates_in_a_biotic-biotic_interaction_with ! participates in a biotic-biotic interaction with inverse_of: is_killed_by ! is killed by +[Typedef] +id: kleptoparasite_of +name: kleptoparasite of +def: "A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material" [] +xref: RO:0008503 +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Kleptoparasitism xsd:string +is_a: parasite_of ! parasite of +inverse_of: kleptoparasitized_by ! kleptoparasitized by + +[Typedef] +id: kleptoparasitized_by +name: kleptoparasitized by +def: "inverse of kleptoparasite of" [] +subset: RO:0002259 +xref: RO:0008504 +is_a: parasitized_by ! parasitized by + [Typedef] id: lays_eggs_in name: lays eggs in @@ -2085,6 +2141,14 @@ is_a: parasite_of ! parasite of is_a: visits ! visits inverse_of: has_eggs_laid_in_by ! has eggs laid in by +[Typedef] +id: lays_eggs_on +name: lays eggs on +def: "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." [] +xref: RO:0008507 +is_a: visits ! visits +inverse_of: has_eggs_laid_on_by ! has eggs laid on by + [Typedef] id: lumen_of name: lumen of @@ -2202,6 +2266,7 @@ property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string +is_transitive: true is_a: causally_upstream_of,_negative_effect ! causally upstream of, negative effect is_a: regulates ! regulates inverse_of: negatively_regulated_by ! negatively regulated by @@ -2432,6 +2497,7 @@ xref: RO:0002213 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "positively regulates (process to process)" xsd:string +is_transitive: true is_a: causally_upstream_of,_positive_effect ! causally upstream of, positive effect is_a: regulates ! regulates inverse_of: positively_regulated_by ! positively regulated by diff --git a/src/ontology/subsets/ro-causal.owl b/src/ontology/subsets/ro-causal.owl index 5922d6d2..75c7e881 100644 --- a/src/ontology/subsets/ro-causal.owl +++ b/src/ontology/subsets/ro-causal.owl @@ -1100,6 +1100,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 + x negatively regulates y if and only if the progression of x reduces the frequency, rate or extent of y Chris Mungall @@ -1118,6 +1119,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 + x positively regulates y if and only if the progression of x increases the frequency, rate or extent of y Chris Mungall @@ -5096,6 +5098,110 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + - - - - - - - @@ -217,17 +211,6 @@ - - - - Chris Mungall - Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. - https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 - - - - - @@ -817,6 +800,7 @@ Where we have an annotation assertion + @@ -825,6 +809,7 @@ Where we have an annotation assertion + @@ -2165,6 +2150,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + @@ -2185,6 +2171,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + @@ -2349,6 +2336,17 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + + + Chris Mungall + Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 + + + + + @@ -4967,12 +4965,6 @@ the a supports either the existence of b, or the truth value of b. - - - - - - x starts ends with y if and only if the time point at which x starts is equivalent to the time point at which y starts. Formally: x existence starts with y iff α(x) = α(y). Chris Mungall existence starts with @@ -5030,12 +5022,6 @@ the a supports either the existence of b, or the truth value of b. - - - - - - x existence ends with y if and only if the time point at which x ends is equivalent to the time point at which y ends. Formally: x existence ends with y iff ω(x) = ω(y). Chris Mungall The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. @@ -5047,7 +5033,6 @@ the a supports either the existence of b, or the truth value of b. - x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships @@ -6575,6 +6560,94 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + epiphyte of + + + + + + + + + inverse of epiphyte of + + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + has eggs laid on by + + + + - - - curation status specification @@ -6651,6 +6721,114 @@ Environments include natural environments or exposures, experimentally applied c is defined by This is an experimental annotation + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/src/ontology/subsets/ro-interaction.obo b/src/ontology/subsets/ro-interaction.obo index a91a55b1..83194ef5 100644 --- a/src/ontology/subsets/ro-interaction.obo +++ b/src/ontology/subsets/ro-interaction.obo @@ -455,6 +455,14 @@ xref: RO:0002478 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: child_nucleus_of ! child nucleus of +[Typedef] +id: co-occurs +name: co-occurs +def: "An interaction relationship describing organisms that often occur together at the same time and space or in the same environment." [] +xref: RO:0008506 +is_symmetric: true +is_a: ecologically_related_to ! ecologically related to + [Typedef] id: coincident_with name: coincident with @@ -633,6 +641,13 @@ def: "A relationship between an entity and a condition (phenotype or disease) wi xref: RO:0003308 is_a: correlated_with ! correlated with +[Typedef] +id: creates_habitat_for +name: creates habitat for +def: "An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism." [] +xref: RO:0008505 +is_a: ecologically_related_to ! ecologically related to + [Typedef] id: dendrite_synapsed_in name: dendrite synapsed in @@ -1036,6 +1051,15 @@ xref: RO:0002230 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: has_part +[Typedef] +id: epiphyte_of +name: epiphyte of +def: "An interaction relationship wherein a plant or algae is living on the outside surface of another plant." [] +xref: RO:0008501 +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Epiphyte xsd:string +is_a: symbiotically_interacts_with ! symbiotically interacts with +inverse_of: has_epiphyte ! has epiphyte + [Typedef] id: exports name: exports @@ -1233,6 +1257,13 @@ xref: RO:0002625 is_a: parasitized_by ! parasitized by is_a: visited_by ! visited by +[Typedef] +id: has_eggs_laid_on_by +name: has eggs laid on by +def: "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." [] +xref: RO:0008508 +is_a: visited_by ! visited by + [Typedef] id: has_end_sequence name: has end sequence @@ -1253,6 +1284,14 @@ name: has endoparasite xref: RO:0002635 is_a: parasitized_by ! parasitized by +[Typedef] +id: has_epiphyte +name: has epiphyte +def: "inverse of epiphyte of" [] +subset: RO:0002259 +xref: RO:0008502 +is_a: symbiotically_interacts_with ! symbiotically interacts with + [Typedef] id: has_exposure_receptor name: has exposure receptor @@ -2077,6 +2116,23 @@ property_value: IAO:0000119 https://github.com/jhpoelen/eol-globi-data/issues/14 is_a: participates_in_a_biotic-biotic_interaction_with ! participates in a biotic-biotic interaction with inverse_of: is_killed_by ! is killed by +[Typedef] +id: kleptoparasite_of +name: kleptoparasite of +def: "A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material" [] +xref: RO:0008503 +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Kleptoparasitism xsd:string +is_a: parasite_of ! parasite of +inverse_of: kleptoparasitized_by ! kleptoparasitized by + +[Typedef] +id: kleptoparasitized_by +name: kleptoparasitized by +def: "inverse of kleptoparasite of" [] +subset: RO:0002259 +xref: RO:0008504 +is_a: parasitized_by ! parasitized by + [Typedef] id: lays_eggs_in name: lays eggs in @@ -2085,6 +2141,14 @@ is_a: parasite_of ! parasite of is_a: visits ! visits inverse_of: has_eggs_laid_in_by ! has eggs laid in by +[Typedef] +id: lays_eggs_on +name: lays eggs on +def: "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." [] +xref: RO:0008507 +is_a: visits ! visits +inverse_of: has_eggs_laid_on_by ! has eggs laid on by + [Typedef] id: lumen_of name: lumen of @@ -2202,6 +2266,7 @@ property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string +is_transitive: true is_a: causally_upstream_of,_negative_effect ! causally upstream of, negative effect is_a: regulates ! regulates inverse_of: negatively_regulated_by ! negatively regulated by @@ -2432,6 +2497,7 @@ xref: RO:0002213 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "positively regulates (process to process)" xsd:string +is_transitive: true is_a: causally_upstream_of,_positive_effect ! causally upstream of, positive effect is_a: regulates ! regulates inverse_of: positively_regulated_by ! positively regulated by diff --git a/src/ontology/subsets/ro-interaction.owl b/src/ontology/subsets/ro-interaction.owl index dee89ee6..b80c0d7e 100644 --- a/src/ontology/subsets/ro-interaction.owl +++ b/src/ontology/subsets/ro-interaction.owl @@ -1100,6 +1100,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 + x negatively regulates y if and only if the progression of x reduces the frequency, rate or extent of y Chris Mungall @@ -1118,6 +1119,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 + x positively regulates y if and only if the progression of x increases the frequency, rate or extent of y Chris Mungall @@ -5096,6 +5098,110 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + - - - - - - - @@ -217,17 +211,6 @@ - - - - Chris Mungall - Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. - https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 - - - - - @@ -817,6 +800,7 @@ Where we have an annotation assertion + @@ -825,6 +809,7 @@ Where we have an annotation assertion + @@ -2165,6 +2150,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + @@ -2185,6 +2171,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + @@ -2349,6 +2336,17 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + + + Chris Mungall + Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 + + + + + @@ -4967,12 +4965,6 @@ the a supports either the existence of b, or the truth value of b. - - - - - - x starts ends with y if and only if the time point at which x starts is equivalent to the time point at which y starts. Formally: x existence starts with y iff α(x) = α(y). Chris Mungall existence starts with @@ -5030,12 +5022,6 @@ the a supports either the existence of b, or the truth value of b. - - - - - - x existence ends with y if and only if the time point at which x ends is equivalent to the time point at which y ends. Formally: x existence ends with y iff ω(x) = ω(y). Chris Mungall The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription. @@ -5047,7 +5033,6 @@ the a supports either the existence of b, or the truth value of b. - x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships @@ -6575,6 +6560,94 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + epiphyte of + + + + + + + + + inverse of epiphyte of + + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + has eggs laid on by + + + + - - - curation status specification @@ -6651,6 +6721,114 @@ Environments include natural environments or exposures, experimentally applied c is defined by This is an experimental annotation + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/subsets/ro-interaction.obo b/subsets/ro-interaction.obo index a91a55b1..83194ef5 100644 --- a/subsets/ro-interaction.obo +++ b/subsets/ro-interaction.obo @@ -455,6 +455,14 @@ xref: RO:0002478 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: child_nucleus_of ! child nucleus of +[Typedef] +id: co-occurs +name: co-occurs +def: "An interaction relationship describing organisms that often occur together at the same time and space or in the same environment." [] +xref: RO:0008506 +is_symmetric: true +is_a: ecologically_related_to ! ecologically related to + [Typedef] id: coincident_with name: coincident with @@ -633,6 +641,13 @@ def: "A relationship between an entity and a condition (phenotype or disease) wi xref: RO:0003308 is_a: correlated_with ! correlated with +[Typedef] +id: creates_habitat_for +name: creates habitat for +def: "An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism." [] +xref: RO:0008505 +is_a: ecologically_related_to ! ecologically related to + [Typedef] id: dendrite_synapsed_in name: dendrite synapsed in @@ -1036,6 +1051,15 @@ xref: RO:0002230 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: has_part +[Typedef] +id: epiphyte_of +name: epiphyte of +def: "An interaction relationship wherein a plant or algae is living on the outside surface of another plant." [] +xref: RO:0008501 +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Epiphyte xsd:string +is_a: symbiotically_interacts_with ! symbiotically interacts with +inverse_of: has_epiphyte ! has epiphyte + [Typedef] id: exports name: exports @@ -1233,6 +1257,13 @@ xref: RO:0002625 is_a: parasitized_by ! parasitized by is_a: visited_by ! visited by +[Typedef] +id: has_eggs_laid_on_by +name: has eggs laid on by +def: "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." [] +xref: RO:0008508 +is_a: visited_by ! visited by + [Typedef] id: has_end_sequence name: has end sequence @@ -1253,6 +1284,14 @@ name: has endoparasite xref: RO:0002635 is_a: parasitized_by ! parasitized by +[Typedef] +id: has_epiphyte +name: has epiphyte +def: "inverse of epiphyte of" [] +subset: RO:0002259 +xref: RO:0008502 +is_a: symbiotically_interacts_with ! symbiotically interacts with + [Typedef] id: has_exposure_receptor name: has exposure receptor @@ -2077,6 +2116,23 @@ property_value: IAO:0000119 https://github.com/jhpoelen/eol-globi-data/issues/14 is_a: participates_in_a_biotic-biotic_interaction_with ! participates in a biotic-biotic interaction with inverse_of: is_killed_by ! is killed by +[Typedef] +id: kleptoparasite_of +name: kleptoparasite of +def: "A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material" [] +xref: RO:0008503 +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Kleptoparasitism xsd:string +is_a: parasite_of ! parasite of +inverse_of: kleptoparasitized_by ! kleptoparasitized by + +[Typedef] +id: kleptoparasitized_by +name: kleptoparasitized by +def: "inverse of kleptoparasite of" [] +subset: RO:0002259 +xref: RO:0008504 +is_a: parasitized_by ! parasitized by + [Typedef] id: lays_eggs_in name: lays eggs in @@ -2085,6 +2141,14 @@ is_a: parasite_of ! parasite of is_a: visits ! visits inverse_of: has_eggs_laid_in_by ! has eggs laid in by +[Typedef] +id: lays_eggs_on +name: lays eggs on +def: "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." [] +xref: RO:0008507 +is_a: visits ! visits +inverse_of: has_eggs_laid_on_by ! has eggs laid on by + [Typedef] id: lumen_of name: lumen of @@ -2202,6 +2266,7 @@ property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string +is_transitive: true is_a: causally_upstream_of,_negative_effect ! causally upstream of, negative effect is_a: regulates ! regulates inverse_of: negatively_regulated_by ! negatively regulated by @@ -2432,6 +2497,7 @@ xref: RO:0002213 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "positively regulates (process to process)" xsd:string +is_transitive: true is_a: causally_upstream_of,_positive_effect ! causally upstream of, positive effect is_a: regulates ! regulates inverse_of: positively_regulated_by ! positively regulated by diff --git a/subsets/ro-interaction.owl b/subsets/ro-interaction.owl index dee89ee6..b80c0d7e 100644 --- a/subsets/ro-interaction.owl +++ b/subsets/ro-interaction.owl @@ -1100,6 +1100,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 + x negatively regulates y if and only if the progression of x reduces the frequency, rate or extent of y Chris Mungall @@ -1118,6 +1119,7 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000 + x positively regulates y if and only if the progression of x increases the frequency, rate or extent of y Chris Mungall @@ -5096,6 +5098,110 @@ Environments include natural environments or exposures, experimentally applied c + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + + + + + + + An interaction relationship wherein a plant or algae is living on the outside surface of another plant. + https://en.wikipedia.org/wiki/Epiphyte + RO:0008501 + epiphyte_of + epiphyte of + + + + + + + + + inverse of epiphyte of + RO:0008502 + + has_epiphyte + has epiphyte + + + + + + + + + + A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material + https://en.wikipedia.org/wiki/Kleptoparasitism + RO:0008503 + kleptoparasite_of + kleptoparasite of + + + + + + + + + inverse of kleptoparasite of + RO:0008504 + + kleptoparasitized_by + kleptoparasitized by + + + + + + + + + An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism. + RO:0008505 + creates_habitat_for + creates habitat for + + + + + + + + + + An interaction relationship describing organisms that often occur together at the same time and space or in the same environment. + RO:0008506 + co-occurs + co-occurs + + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008507 + lays_eggs_on + lays eggs on + + + + + + + + + An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation. + RO:0008508 + has_eggs_laid_on_by + has eggs laid on by + + + +