From dd541eb02d08ab6e8a72c2c7fbcbe5db237fe444 Mon Sep 17 00:00:00 2001 From: Chris Mungall Date: Mon, 29 May 2017 11:26:56 -0700 Subject: [PATCH] Temporarily weakening domain of has-developmental-contribution-from to be an IC. While this can be justified, it leads to violations across most AOs including Uberon right now. We can explore adding in future, this may involve distinguishing between true developmental lineages (continuity of cells) and a weaker sense of tracing continuity between parts of ICs in general (eg one lumen forming from two predecessors when a membrane disappears) See https://github.com/obophenotype/uberon/issues/1324 Inn this commit I also strengthen the grouping relation to only apply between continuants --- src/ontology/ro-edit.owl | 36 ++++++++++++++++++++---------------- 1 file changed, 20 insertions(+), 16 deletions(-) diff --git a/src/ontology/ro-edit.owl b/src/ontology/ro-edit.owl index 993c0562..a07d9863 100644 --- a/src/ontology/ro-edit.owl +++ b/src/ontology/ro-edit.owl @@ -1,6 +1,6 @@ - + + + sardine has consumer some homo sapiens + + 'has consumer' is a relation between a material entity and an organism in which the former can normally be digested or otherwise absorbed by the latter without immediate or persistent ill effect. + Damion Dooley + has consumer + + + + @@ -2951,7 +2963,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. - + @@ -3024,6 +3036,8 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R. + + Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p false @@ -7116,7 +7130,7 @@ Environments include natural environments or exposures, experimentally applied c - + @@ -7154,15 +7168,6 @@ Environments include natural environments or exposures, experimentally applied c immersed in - - - - - sardine has consumer some homo sapiens - 'has consumer' is a relation between a material entity and an organism in which the former can normally be digested or otherwise absorbed by the latter without immediate or persistent ill effect. - Damion Dooley - has consumer - @@ -7176,8 +7181,7 @@ Environments include natural environments or exposures, experimentally applied c Damion Dooley has primary substance added - - + @@ -7818,5 +7822,5 @@ Environments include natural environments or exposures, experimentally applied c - +