From d59ec91931ecd0146770ab319ef7f2c7caa77564 Mon Sep 17 00:00:00 2001 From: Michael Sinclair Date: Fri, 20 Jul 2018 17:09:25 -0600 Subject: [PATCH] removed generic bearer of, include only generically depends on per BFO spec --- src/ontology/ro-edit.owl | 19 +++++-------------- 1 file changed, 5 insertions(+), 14 deletions(-) diff --git a/src/ontology/ro-edit.owl b/src/ontology/ro-edit.owl index 3db7007f..99e8efc6 100644 --- a/src/ontology/ro-edit.owl +++ b/src/ontology/ro-edit.owl @@ -513,7 +513,6 @@ Declaration(ObjectProperty(obo:RO_0009003)) Declaration(ObjectProperty(obo:RO_0009005)) Declaration(ObjectProperty(obo:RO_0009501)) Declaration(ObjectProperty(obo:RO_0010001)) -Declaration(ObjectProperty(obo:RO_0010002)) Declaration(ObjectProperty(owl:topObjectProperty)) Declaration(AnnotationProperty(obo:IAO_0000232)) Declaration(AnnotationProperty(obo:IAO_0000589)) @@ -5502,22 +5501,14 @@ ObjectPropertyRange(obo:RO_0009501 obo:BFO_0000015) # Object Property: obo:RO_0010001 (generically depends on) -AnnotationAssertion(obo:IAO_0000112 obo:RO_0010001 "A computer file generically depends on a hard drive, where multiple copies of the file are stored on multiple hard drives.") -AnnotationAssertion(obo:IAO_0000112 obo:RO_0010001 "A gene generically depends on a region of molecular DNA, where multiple copies of the gene depend on multiple regions of molecular DNA.") +AnnotationAssertion(obo:IAO_0000112 obo:RO_0010001 "A copy of a pdf file generically depends on a laptop, where multiple copies of the file may depend on multiple laptops at any given time.") +AnnotationAssertion(obo:IAO_0000112 obo:RO_0010001 "A copy of a protein sequence generically depends on a protein molecule, where multiple copies of the sequence may depend on multiple molecules at any given time.") AnnotationAssertion(obo:IAO_0000115 obo:RO_0010001 "a generically depends on b = def. a exists and b exists and: for some type B, b is an instance of B and necessarily (if a exists then some B exists)") AnnotationAssertion(obo:IAO_0000119 obo:RO_0010001 "Arp, Smith, and Spear. Building Ontologies with Basic Formal Ontology. The MIT Press: 2015. p. 105.") AnnotationAssertion(rdfs:label obo:RO_0010001 "generically depends on") -SubObjectPropertyOf(obo:RO_0010001 obo:RO_0002502) -InverseObjectProperties(obo:RO_0010001 obo:RO_0010002) - -# Object Property: obo:RO_0010002 (generic bearer of) - -AnnotationAssertion(obo:IAO_0000112 obo:RO_0010002 "A hard drive is a generic bearer of a copy of a computer file, where multiple copies of the file can each depend on multiple hard drives.") -AnnotationAssertion(obo:IAO_0000112 obo:RO_0010002 "A region of molecular DNA is a generic bearer of a copy of a gene, where multiple copies of the gene can each depend on multiple regions of molecular DNA.") -AnnotationAssertion(obo:IAO_0000115 obo:RO_0010002 "Where the generic bearer is a b that satisfies: a generically depends on b = def. a exists and: for some type B, b is an instance of B and necessarily (if a exists then some B exists).") -AnnotationAssertion(obo:IAO_0000119 obo:RO_0010002 "Arp, Smith, and Spear. Building Ontologies with Basic Formal Ontology. The MIT Press: 2015. p. 105.") -AnnotationAssertion(rdfs:label obo:RO_0010002 "generic bearer of"@en) -SubObjectPropertyOf(obo:RO_0010002 obo:RO_0000053) +SubObjectPropertyOf(obo:RO_0010001 owl:topObjectProperty) +ObjectPropertyDomain(obo:RO_0010001 obo:BFO_0000031) +ObjectPropertyRange(obo:RO_0010001 obo:BFO_0000004) # Object Property: obo:RO_HOM0000001 (in homology relationship with)