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    17 repositories

    • scanreader

      Public
      Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).
      Python
      •
      MIT License
      •11•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • MINI2P_toolbox

      Public
      The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More details can be found in the original paper "Large-scale two-photon calcium imaging in freely moving mice(2021)".
      MATLAB
      •
      MIT License
      •20•89•3•0•Updated Oct 27, 2023Oct 27, 2023

    • opexebo

      Public
      Collection of python code for electrophysiology /ɪˌlɛktrəʊfɪzɪˈɒlədʒi/
      Python
      •
      MIT License
      •7•8•3•0•Updated Oct 16, 2023Oct 16, 2023

    • dj-docs

      Public
      Documentation of datajoint @ Kavli Institute
      Jupyter Notebook
      •
      MIT License
      •8•2•1•0•Updated Sep 14, 2023Sep 14, 2023

    • wheel_tracker

      Public
      Code for rotary encoded wheels / tracking
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Mar 20, 2023Mar 20, 2023

    • datajoint-extensions

      Public
      Additional tools written to extend the Datajoint library
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 12, 2022Oct 12, 2022

    • npx-compress

      Public
      Scripts to compress and decompress NPX binary files
      Python
      •
      MIT License
      •0•2•0•0•Updated Apr 1, 2022Apr 1, 2022

    • mini2p_topography

      Public
      Publication of code and dataset details for Obenhaus et al 2021
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Jan 27, 2022Jan 27, 2022

    • project-treadmill

      Public
      Code for Jørgen's treadmill tracking
      Jupyter Notebook
      •
      MIT License
      •4•0•0•0•Updated Mar 20, 2020Mar 20, 2020

    • 2P_tracking

      Public
      Code for tracking behavior (via 2 LEDs) with a Basler USB3.0 camera
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 16, 2019Feb 16, 2019

    • matmot

      Public
      Stream OptiTrack Motive data to file via MATLAB
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2018Oct 30, 2018

    • Suite2P

      Public
      Tools for processing 2P recordings
      MATLAB
      •
      Other
      •66•0•0•0•Updated Oct 1, 2018Oct 1, 2018

    • probes

      Public
      Tools for building and plotting physical models of silicon probes
      MATLAB
      •0•1•0•0•Updated Sep 6, 2018Sep 6, 2018

    • EasyGUI

      Public
      Build GUIs quickly and easily in MATLAB
      MATLAB
      •
      Other
      •2•2•0•0•Updated Jul 31, 2018Jul 31, 2018

    • python-neo

      Public
      Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •248•0•0•0•Updated Jun 8, 2018Jun 8, 2018

    • api-matlab

      Public archive
      MATLAB
      •5•0•0•0•Updated Apr 5, 2018Apr 5, 2018

    • djcat-alyx

      Public archive
      Datajoint Implementation of the Alyx schema (https://github.com/cortex-lab/alyx)
      Jupyter Notebook
      •3•2•0•0•Updated Dec 13, 2017Dec 13, 2017