diff --git a/stream/core.py b/stream/core.py index 46d0790..095e8a6 100755 --- a/stream/core.py +++ b/stream/core.py @@ -4558,6 +4558,7 @@ def save_web_report(adata,n_genes=5,file_name='stream_report',preference=None, color = df_sample.sample(frac=1,random_state=100)['label_color'] coord = df_coord.sample(frac=1,random_state=100) df_coord_cells = pd.concat([color, coord], axis=1) + df_coord_cells = df_coord_cells.iloc[:,:4] df_coord_cells.columns = ['color','D0','D1','D2'] df_coord_cells.to_csv(os.path.join(reportdir,'coord_cells.csv'),sep='\t') @@ -4573,7 +4574,7 @@ def save_web_report(adata,n_genes=5,file_name='stream_report',preference=None, #coordinates of states(nodes) in 3D plots df_coord_states = pd.DataFrame(columns=[0,1,2]) for x in dict_nodes_label.keys(): - df_coord_states.loc[dict_nodes_label[x]] = dict_nodes_pos[x] + df_coord_states.loc[dict_nodes_label[x]] = dict_nodes_pos[x][:3] df_coord_states.sort_index(inplace=True) df_coord_states.to_csv(os.path.join(reportdir,'coord_states.csv'),sep='\t')