diff --git a/stdpopsim/catalog/ApiMel/GeneticMap_ApisMellifera.tar.gz b/stdpopsim/catalog/ApiMel/GeneticMap_ApisMellifera.tar.gz deleted file mode 100644 index 96621cdf4..000000000 Binary files a/stdpopsim/catalog/ApiMel/GeneticMap_ApisMellifera.tar.gz and /dev/null differ diff --git a/stdpopsim/catalog/ApiMel/genetic_maps.py b/stdpopsim/catalog/ApiMel/genetic_maps.py index 95a99d7a2..fd4c7422c 100644 --- a/stdpopsim/catalog/ApiMel/genetic_maps.py +++ b/stdpopsim/catalog/ApiMel/genetic_maps.py @@ -18,7 +18,10 @@ from three colonies of Apis mellifera ligustica from China. The study included three diploid queens, six diploid workers, and 46 haploid drones. The map was first lifted from the Amel_4.5 to Amel_HAv3.1 - assembly. To convert the cross-over events to + assembly. To convert the crossover events to genetic position, the + recombination rate was assumed stable between crossovers and the + genetic position was inferred from the physical positions of SNPs + within these crossover ranges. """, url=( "https://stdpopsim.s3-us-west-2.amazonaws.com/" @@ -30,4 +33,3 @@ ) _species.add_genetic_map(_gm) -