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Masking repeated k-mers #7

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karel-brinda opened this issue Mar 27, 2018 · 0 comments
Open

Masking repeated k-mers #7

karel-brinda opened this issue Mar 27, 2018 · 0 comments
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@karel-brinda
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Description

It would be nice to have an option for masking those k-mers that are repeated in the read (only the first occurrence of the k-mer would be reported).

Example:

  • ref: 
    >node
AAA
  • read AAAAAAAAAAAAAAAAAAAA, k=3, output: node:1 M:16 instead of node:17
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@karel-brinda